Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_757

Experiment: Gjerstad humics 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_755 and Pf6N2E2_756 are separated by 373 nucleotidesPf6N2E2_756 and Pf6N2E2_757 are separated by 274 nucleotidesPf6N2E2_757 and Pf6N2E2_758 overlap by 4 nucleotides Pf6N2E2_755 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 864,399 to 866,138 _755 Pf6N2E2_756 - hypothetical protein, at 866,512 to 866,685 _756 Pf6N2E2_757 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 866,960 to 867,940 _757 Pf6N2E2_758 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 867,937 to 869,457 _758 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 866.057 kb on - strandat 866.211 kb on + strandat 866.211 kb on + strandat 866.211 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.225 kb on - strandat 866.228 kb on - strandat 866.420 kb on + strandat 866.421 kb on - strandat 866.421 kb on - strandat 866.453 kb on + strandat 866.453 kb on + strandat 866.454 kb on - strandat 866.454 kb on - strandat 866.593 kb on + strand, within Pf6N2E2_756at 866.593 kb on + strand, within Pf6N2E2_756at 866.594 kb on - strand, within Pf6N2E2_756at 866.594 kb on - strand, within Pf6N2E2_756at 866.615 kb on - strand, within Pf6N2E2_756at 866.645 kb on + strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.706 kb on + strandat 866.706 kb on + strandat 866.707 kb on - strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.716 kb on - strandat 866.716 kb on - strandat 866.716 kb on - strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.733 kb on - strandat 866.733 kb on - strandat 866.749 kb on + strandat 866.750 kb on - strandat 866.753 kb on - strandat 866.863 kb on - strandat 866.873 kb on + strandat 866.873 kb on + strandat 866.874 kb on - strandat 866.910 kb on - strandat 866.917 kb on - strandat 866.929 kb on + strandat 866.929 kb on + strandat 866.930 kb on - strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.936 kb on - strandat 866.936 kb on - strandat 866.941 kb on + strandat 866.944 kb on + strandat 866.945 kb on - strandat 867.044 kb on + strandat 867.045 kb on - strandat 867.225 kb on + strand, within Pf6N2E2_757at 867.225 kb on + strand, within Pf6N2E2_757at 867.225 kb on + strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.248 kb on + strand, within Pf6N2E2_757at 867.248 kb on + strand, within Pf6N2E2_757at 867.249 kb on - strand, within Pf6N2E2_757at 867.249 kb on - strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.252 kb on - strand, within Pf6N2E2_757at 867.252 kb on - strand, within Pf6N2E2_757at 867.302 kb on + strand, within Pf6N2E2_757at 867.302 kb on + strand, within Pf6N2E2_757at 867.486 kb on - strand, within Pf6N2E2_757at 867.549 kb on - strand, within Pf6N2E2_757at 867.872 kb on + strandat 867.872 kb on + strandat 867.872 kb on + strandat 867.873 kb on - strandat 867.873 kb on - strandat 867.873 kb on - strandat 867.873 kb on - strandat 867.873 kb on - strandat 868.237 kb on + strand, within Pf6N2E2_758at 868.237 kb on + strand, within Pf6N2E2_758at 868.238 kb on - strand, within Pf6N2E2_758at 868.270 kb on + strand, within Pf6N2E2_758at 868.271 kb on - strand, within Pf6N2E2_758at 868.508 kb on - strand, within Pf6N2E2_758at 868.522 kb on + strand, within Pf6N2E2_758at 868.522 kb on + strand, within Pf6N2E2_758at 868.603 kb on + strand, within Pf6N2E2_758at 868.603 kb on + strand, within Pf6N2E2_758at 868.603 kb on + strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.604 kb on - strand, within Pf6N2E2_758at 868.616 kb on + strand, within Pf6N2E2_758at 868.616 kb on + strand, within Pf6N2E2_758at 868.617 kb on - strand, within Pf6N2E2_758at 868.617 kb on - strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.936 kb on + strand, within Pf6N2E2_758at 868.937 kb on - strand, within Pf6N2E2_758at 868.937 kb on - strand, within Pf6N2E2_758at 868.937 kb on - strand, within Pf6N2E2_758

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Per-strain Table

Position Strand Gene LocusTag Fraction Gjerstad humics 0.5 M
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866,057 - +0.5
866,211 + -0.0
866,211 + -0.1
866,211 + +0.7
866,224 + +0.9
866,224 + -0.1
866,224 + -0.4
866,224 + +0.2
866,225 - -1.5
866,228 - -0.4
866,420 + -0.1
866,421 - -0.7
866,421 - -0.7
866,453 + +0.3
866,453 + +0.1
866,454 - +0.2
866,454 - +0.9
866,593 + Pf6N2E2_756 0.47 -2.5
866,593 + Pf6N2E2_756 0.47 -0.3
866,594 - Pf6N2E2_756 0.47 -0.6
866,594 - Pf6N2E2_756 0.47 +0.2
866,615 - Pf6N2E2_756 0.59 -0.5
866,645 + Pf6N2E2_756 0.76 -0.8
866,646 - Pf6N2E2_756 0.77 -0.9
866,646 - Pf6N2E2_756 0.77 -0.8
866,646 - Pf6N2E2_756 0.77 +0.1
866,646 - Pf6N2E2_756 0.77 -0.2
866,706 + -0.2
866,706 + -1.0
866,707 - -1.2
866,715 + -0.2
866,715 + -2.0
866,715 + +1.1
866,715 + -0.2
866,715 + -0.8
866,715 + -0.3
866,716 - +0.1
866,716 - -0.8
866,716 - +0.1
866,717 + +1.8
866,717 + +0.4
866,717 + -0.9
866,717 + -0.9
866,718 - +1.3
866,718 - -0.7
866,718 - -0.5
866,718 - -0.0
866,718 - +0.2
866,733 - -0.3
866,733 - +0.2
866,749 + -1.1
866,750 - +0.4
866,753 - +0.4
866,863 - +0.9
866,873 + -0.1
866,873 + +0.9
866,874 - +0.9
866,910 - +0.4
866,917 - -0.5
866,929 + +1.6
866,929 + -2.0
866,930 - +1.1
866,935 + -0.7
866,935 + +0.4
866,935 + +0.7
866,935 + -0.3
866,936 - -0.0
866,936 - +0.2
866,941 + +1.1
866,944 + +0.1
866,945 - +0.8
867,044 + +0.2
867,045 - -1.2
867,225 + Pf6N2E2_757 0.27 +0.5
867,225 + Pf6N2E2_757 0.27 -1.4
867,225 + Pf6N2E2_757 0.27 -0.3
867,226 - Pf6N2E2_757 0.27 -0.3
867,226 - Pf6N2E2_757 0.27 +0.9
867,226 - Pf6N2E2_757 0.27 +0.6
867,248 + Pf6N2E2_757 0.29 +0.2
867,248 + Pf6N2E2_757 0.29 +0.5
867,249 - Pf6N2E2_757 0.29 +0.4
867,249 - Pf6N2E2_757 0.29 +0.5
867,251 + Pf6N2E2_757 0.30 +0.7
867,251 + Pf6N2E2_757 0.30 -0.3
867,251 + Pf6N2E2_757 0.30 +0.3
867,252 - Pf6N2E2_757 0.30 +2.1
867,252 - Pf6N2E2_757 0.30 -2.1
867,302 + Pf6N2E2_757 0.35 +0.1
867,302 + Pf6N2E2_757 0.35 +0.4
867,486 - Pf6N2E2_757 0.54 +0.3
867,549 - Pf6N2E2_757 0.60 +0.5
867,872 + +0.4
867,872 + +0.1
867,872 + -0.7
867,873 - -0.6
867,873 - +0.9
867,873 - +1.0
867,873 - -0.3
867,873 - +0.8
868,237 + Pf6N2E2_758 0.20 +0.4
868,237 + Pf6N2E2_758 0.20 +1.9
868,238 - Pf6N2E2_758 0.20 +0.8
868,270 + Pf6N2E2_758 0.22 +0.2
868,271 - Pf6N2E2_758 0.22 +1.4
868,508 - Pf6N2E2_758 0.38 +0.2
868,522 + Pf6N2E2_758 0.38 -2.4
868,522 + Pf6N2E2_758 0.38 +0.5
868,603 + Pf6N2E2_758 0.44 +1.3
868,603 + Pf6N2E2_758 0.44 +0.1
868,603 + Pf6N2E2_758 0.44 +0.5
868,604 - Pf6N2E2_758 0.44 -1.4
868,604 - Pf6N2E2_758 0.44 -0.3
868,604 - Pf6N2E2_758 0.44 -0.0
868,604 - Pf6N2E2_758 0.44 -0.2
868,604 - Pf6N2E2_758 0.44 -0.8
868,604 - Pf6N2E2_758 0.44 +0.5
868,604 - Pf6N2E2_758 0.44 -0.0
868,616 + Pf6N2E2_758 0.45 +3.9
868,616 + Pf6N2E2_758 0.45 +0.2
868,617 - Pf6N2E2_758 0.45 -1.0
868,617 - Pf6N2E2_758 0.45 +0.5
868,936 + Pf6N2E2_758 0.66 +2.7
868,936 + Pf6N2E2_758 0.66 -0.3
868,936 + Pf6N2E2_758 0.66 -1.6
868,936 + Pf6N2E2_758 0.66 +1.1
868,936 + Pf6N2E2_758 0.66 -1.2
868,936 + Pf6N2E2_758 0.66 +0.2
868,936 + Pf6N2E2_758 0.66 -0.3
868,936 + Pf6N2E2_758 0.66 -3.1
868,937 - Pf6N2E2_758 0.66 -0.1
868,937 - Pf6N2E2_758 0.66 +0.6
868,937 - Pf6N2E2_758 0.66 +0.5

Or see this region's nucleotide sequence