Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5321

Experiment: Gjerstad humics 0.5 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gjerstad humics 0.5 M
6,115,353	+				-1.5
6,115,353	+				-3.5
6,115,353	+				-2.2
6,115,354	-				-2.2
6,115,369	+				-3.0
6,115,369	+				-0.2
6,115,370	-				-1.9
6,115,370	-				-3.2
6,115,464	+		Pf6N2E2_5319	0.17	-2.0
6,115,465	-		Pf6N2E2_5319	0.17	-2.5
6,115,509	+		Pf6N2E2_5319	0.24	-3.7
6,115,524	-		Pf6N2E2_5319	0.26	-2.3
6,115,572	+		Pf6N2E2_5319	0.34	-2.5
6,115,573	-		Pf6N2E2_5319	0.34	-2.7
6,115,576	+		Pf6N2E2_5319	0.35	-1.5
6,115,576	+		Pf6N2E2_5319	0.35	-2.3
6,115,576	+		Pf6N2E2_5319	0.35	-3.0
6,115,577	-		Pf6N2E2_5319	0.35	-1.5
6,115,577	-		Pf6N2E2_5319	0.35	-2.1
6,115,617	+		Pf6N2E2_5319	0.41	-0.6
6,115,617	+		Pf6N2E2_5319	0.41	-2.9
6,115,618	-		Pf6N2E2_5319	0.41	-2.7
6,115,854	+		Pf6N2E2_5319	0.79	-3.8
6,115,854	+		Pf6N2E2_5319	0.79	-0.9
6,115,854	+		Pf6N2E2_5319	0.79	-1.7
6,115,854	+		Pf6N2E2_5319	0.79	-2.1
6,115,854	+		Pf6N2E2_5319	0.79	-3.2
6,115,854	+		Pf6N2E2_5319	0.79	-2.7
6,115,854	+		Pf6N2E2_5319	0.79	-1.4
6,115,854	+		Pf6N2E2_5319	0.79	-3.8
6,115,855	-		Pf6N2E2_5319	0.79	-3.4
6,115,855	-		Pf6N2E2_5319	0.79	-2.3
6,115,855	-		Pf6N2E2_5319	0.79	-2.4
6,115,855	-		Pf6N2E2_5319	0.79	-3.7
6,115,855	-		Pf6N2E2_5319	0.79	-1.2
6,115,965	+				-1.4
6,115,965	+				-2.0
6,115,965	+				+1.8
6,115,966	-				-2.7
6,115,966	-				-2.9
6,115,983	+				-2.7
6,115,983	+				-1.5
6,115,983	+				-2.3
6,115,983	+				-1.2
6,115,984	-				-2.3
6,115,984	-				-1.5
6,115,984	-				-1.5
6,116,044	-		Pf6N2E2_5320	0.17	-2.9
6,116,103	+		Pf6N2E2_5320	0.35	-3.0
6,116,103	+		Pf6N2E2_5320	0.35	-1.7
6,116,104	-		Pf6N2E2_5320	0.35	-3.1
6,116,104	-		Pf6N2E2_5320	0.35	-2.6
6,116,164	+		Pf6N2E2_5320	0.53	-2.9
6,116,164	+		Pf6N2E2_5320	0.53	-1.0
6,116,164	+		Pf6N2E2_5320	0.53	-2.2
6,116,165	-		Pf6N2E2_5320	0.53	-2.1
6,116,181	+		Pf6N2E2_5320	0.58	-2.2
6,116,181	+		Pf6N2E2_5320	0.58	-0.2
6,116,181	+		Pf6N2E2_5320	0.58	+0.2
6,116,182	-		Pf6N2E2_5320	0.58	-1.4
6,116,182	-		Pf6N2E2_5320	0.58	-2.1
6,116,216	+		Pf6N2E2_5320	0.68	-1.2
6,116,216	+		Pf6N2E2_5320	0.68	-1.8
6,116,216	+		Pf6N2E2_5320	0.68	-3.0
6,116,216	+		Pf6N2E2_5320	0.68	-2.3
6,116,216	+		Pf6N2E2_5320	0.68	-2.7
6,116,216	+		Pf6N2E2_5320	0.68	-2.7
6,116,216	+		Pf6N2E2_5320	0.68	-1.4
6,116,217	-		Pf6N2E2_5320	0.69	-2.9
6,116,217	-		Pf6N2E2_5320	0.69	-0.9
6,116,217	-		Pf6N2E2_5320	0.69	-4.0
6,116,217	-		Pf6N2E2_5320	0.69	-2.9
6,116,217	-		Pf6N2E2_5320	0.69	-0.4
6,116,217	-		Pf6N2E2_5320	0.69	-2.1
6,116,636	+		Pf6N2E2_5321	0.34	-2.1
6,116,691	-		Pf6N2E2_5321	0.40	-3.3
6,116,691	-		Pf6N2E2_5321	0.40	-1.8
6,116,691	-		Pf6N2E2_5321	0.40	-2.2
6,116,703	-		Pf6N2E2_5321	0.42	-3.5
6,116,703	-		Pf6N2E2_5321	0.42	-3.6
6,116,711	+		Pf6N2E2_5321	0.43	-1.8
6,116,784	-		Pf6N2E2_5321	0.51	-3.2
6,116,864	+		Pf6N2E2_5321	0.60	-3.1
6,116,865	-		Pf6N2E2_5321	0.60	-1.2
6,116,865	-		Pf6N2E2_5321	0.60	-1.4
6,116,865	-		Pf6N2E2_5321	0.60	-2.6
6,116,966	+		Pf6N2E2_5321	0.71	-1.4
6,116,966	+		Pf6N2E2_5321	0.71	-2.1
6,116,967	-		Pf6N2E2_5321	0.71	-2.2
6,116,967	-		Pf6N2E2_5321	0.71	-2.9
6,117,029	+		Pf6N2E2_5321	0.78	-1.8
6,117,029	+		Pf6N2E2_5321	0.78	-1.6
6,117,059	+		Pf6N2E2_5321	0.82	-1.9
6,117,059	+		Pf6N2E2_5321	0.82	-3.0
6,117,059	+		Pf6N2E2_5321	0.82	-1.7
6,117,059	+		Pf6N2E2_5321	0.82	-2.7
6,117,059	+		Pf6N2E2_5321	0.82	-1.8
6,117,059	+		Pf6N2E2_5321	0.82	-0.2
6,117,059	+		Pf6N2E2_5321	0.82	-2.5
6,117,060	-		Pf6N2E2_5321	0.82	-2.6
6,117,060	-		Pf6N2E2_5321	0.82	-2.4
6,117,060	-		Pf6N2E2_5321	0.82	-0.5
6,117,060	-		Pf6N2E2_5321	0.82	-1.0
6,117,060	-		Pf6N2E2_5321	0.82	-1.5
6,117,068	+		Pf6N2E2_5321	0.83	-2.9
6,117,068	+		Pf6N2E2_5321	0.83	-1.3
6,117,068	+		Pf6N2E2_5321	0.83	-2.4
6,117,068	+		Pf6N2E2_5321	0.83	-1.0
6,117,086	+		Pf6N2E2_5321	0.85	-2.4
6,117,209	+				+0.1
6,117,209	+				+0.8
6,117,209	+				+0.6
6,117,209	+				+0.6
6,117,210	-				-1.4
6,117,210	-				-0.3
6,117,218	+				-0.7
6,117,218	+				+0.3
6,117,218	+				+0.5
6,117,219	-				-0.6
6,117,219	-				-1.3
6,117,219	-				-0.3
6,117,219	-				-0.3
6,117,340	+				+1.8
6,117,355	+				+0.1
6,117,377	-				+0.9
6,117,377	-				-0.2
6,117,377	-				+0.2
6,117,377	-				-0.8
6,117,380	+				+0.7
6,117,380	+				-0.1
6,117,406	+				-0.1
6,117,406	+				-0.5
6,117,407	-				+0.3
6,117,431	+				-0.2
6,117,431	+				+0.3
6,117,431	+				+0.3
6,117,431	+				-0.8
6,117,431	+				+0.3
6,117,431	+				+0.3
6,117,432	-				+0.1
6,117,436	+				+0.7
6,117,436	+				-0.4
6,117,436	+				-0.4
6,117,437	-				+0.4
6,117,437	-				+0.0
6,117,511	+		Pf6N2E2_5322	0.23	-0.7
6,117,526	-		Pf6N2E2_5322	0.28	-2.1
6,117,574	-		Pf6N2E2_5322	0.43	+0.1
6,117,595	+		Pf6N2E2_5322	0.50	-0.8
6,117,595	+		Pf6N2E2_5322	0.50	-1.7
6,117,595	+		Pf6N2E2_5322	0.50	-0.1
6,117,595	+		Pf6N2E2_5322	0.50	+0.4
6,117,595	+		Pf6N2E2_5322	0.50	-1.0
6,117,595	+		Pf6N2E2_5322	0.50	-1.1
6,117,595	+		Pf6N2E2_5322	0.50	-0.0
6,117,595	+		Pf6N2E2_5322	0.50	-0.3
6,117,595	+		Pf6N2E2_5322	0.50	-0.7
6,117,595	+		Pf6N2E2_5322	0.50	+0.6
6,117,595	+		Pf6N2E2_5322	0.50	+0.5
6,117,595	+		Pf6N2E2_5322	0.50	-0.1
6,117,596	-		Pf6N2E2_5322	0.50	-0.8
6,117,596	-		Pf6N2E2_5322	0.50	+0.8
6,117,596	-		Pf6N2E2_5322	0.50	-0.0
6,117,596	-		Pf6N2E2_5322	0.50	-1.2
6,117,596	-		Pf6N2E2_5322	0.50	+0.3
6,117,914	+				-0.8
6,117,914	+				+1.5
6,117,915	-				-0.6
6,117,915	-				-0.2
6,117,915	-				+0.1
6,117,915	-				-0.8
6,117,939	+				+0.4
6,117,939	+				+0.6
6,117,939	+				+0.1
6,117,940	-				+0.7
6,117,940	-				+0.7
6,118,079	+		Pf6N2E2_5323	0.20	-0.1