Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4453

Experiment: Gjerstad humics 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4452 and Pf6N2E2_4453 are separated by 17 nucleotidesPf6N2E2_4453 and Pf6N2E2_4454 are separated by 147 nucleotides Pf6N2E2_4452 - Porphobilinogen synthase (EC 4.2.1.24), at 5,183,026 to 5,184,039 _4452 Pf6N2E2_4453 - Polyphosphate kinase (EC 2.7.4.1), at 5,184,057 to 5,186,273 _4453 Pf6N2E2_4454 - Exopolyphosphatase (EC 3.6.1.11), at 5,186,421 to 5,187,923 _4454 Position (kb) 5184 5185 5186 5187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5183.108 kb on + strandat 5183.108 kb on + strandat 5183.109 kb on - strandat 5183.109 kb on - strandat 5183.446 kb on - strand, within Pf6N2E2_4452at 5183.465 kb on - strand, within Pf6N2E2_4452at 5183.465 kb on - strand, within Pf6N2E2_4452at 5183.630 kb on - strand, within Pf6N2E2_4452at 5183.641 kb on + strand, within Pf6N2E2_4452at 5183.642 kb on - strand, within Pf6N2E2_4452at 5183.642 kb on - strand, within Pf6N2E2_4452at 5183.653 kb on + strand, within Pf6N2E2_4452at 5183.654 kb on - strand, within Pf6N2E2_4452at 5183.654 kb on - strand, within Pf6N2E2_4452at 5183.656 kb on + strand, within Pf6N2E2_4452at 5183.656 kb on + strand, within Pf6N2E2_4452at 5183.656 kb on + strand, within Pf6N2E2_4452at 5183.657 kb on - strand, within Pf6N2E2_4452at 5183.657 kb on - strand, within Pf6N2E2_4452at 5183.720 kb on - strand, within Pf6N2E2_4452at 5183.720 kb on - strand, within Pf6N2E2_4452at 5183.720 kb on - strand, within Pf6N2E2_4452at 5183.818 kb on + strand, within Pf6N2E2_4452at 5183.818 kb on + strand, within Pf6N2E2_4452at 5183.890 kb on + strand, within Pf6N2E2_4452at 5183.996 kb on - strandat 5183.996 kb on - strandat 5183.996 kb on - strandat 5183.996 kb on - strandat 5183.996 kb on - strandat 5184.023 kb on + strandat 5184.024 kb on - strandat 5184.037 kb on + strandat 5184.037 kb on + strandat 5184.038 kb on - strandat 5184.088 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.219 kb on + strandat 5184.220 kb on - strandat 5184.220 kb on - strandat 5184.220 kb on - strandat 5184.220 kb on - strandat 5184.481 kb on - strand, within Pf6N2E2_4453at 5184.481 kb on - strand, within Pf6N2E2_4453at 5184.481 kb on - strand, within Pf6N2E2_4453at 5184.585 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.801 kb on + strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.802 kb on - strand, within Pf6N2E2_4453at 5184.873 kb on + strand, within Pf6N2E2_4453at 5184.873 kb on + strand, within Pf6N2E2_4453at 5184.874 kb on - strand, within Pf6N2E2_4453at 5185.029 kb on + strand, within Pf6N2E2_4453at 5185.030 kb on - strand, within Pf6N2E2_4453at 5185.068 kb on + strand, within Pf6N2E2_4453at 5185.068 kb on + strand, within Pf6N2E2_4453at 5185.069 kb on - strand, within Pf6N2E2_4453at 5185.144 kb on - strand, within Pf6N2E2_4453at 5185.321 kb on - strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.479 kb on + strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.480 kb on - strand, within Pf6N2E2_4453at 5185.487 kb on - strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.578 kb on + strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.579 kb on - strand, within Pf6N2E2_4453at 5185.602 kb on + strand, within Pf6N2E2_4453at 5185.603 kb on - strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.611 kb on + strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.612 kb on - strand, within Pf6N2E2_4453at 5185.796 kb on + strand, within Pf6N2E2_4453at 5185.848 kb on + strand, within Pf6N2E2_4453at 5185.848 kb on + strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.849 kb on - strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.945 kb on + strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.946 kb on - strand, within Pf6N2E2_4453at 5185.976 kb on + strand, within Pf6N2E2_4453at 5185.976 kb on + strand, within Pf6N2E2_4453at 5185.977 kb on - strand, within Pf6N2E2_4453at 5185.977 kb on - strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.989 kb on + strand, within Pf6N2E2_4453at 5185.990 kb on - strand, within Pf6N2E2_4453at 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.130 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.178 kb on + strandat 5186.179 kb on - strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.401 kb on + strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.402 kb on - strandat 5186.670 kb on - strand, within Pf6N2E2_4454at 5186.767 kb on + strand, within Pf6N2E2_4454at 5186.768 kb on - strand, within Pf6N2E2_4454at 5186.768 kb on - strand, within Pf6N2E2_4454at 5186.786 kb on - strand, within Pf6N2E2_4454at 5186.791 kb on + strand, within Pf6N2E2_4454at 5187.010 kb on - strand, within Pf6N2E2_4454at 5187.016 kb on + strand, within Pf6N2E2_4454at 5187.017 kb on - strand, within Pf6N2E2_4454

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Per-strain Table

Position Strand Gene LocusTag Fraction Gjerstad humics 0.5 M
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5,183,108 + -0.4
5,183,108 + +0.3
5,183,109 - -1.0
5,183,109 - -1.0
5,183,446 - Pf6N2E2_4452 0.41 +0.3
5,183,465 - Pf6N2E2_4452 0.43 -0.1
5,183,465 - Pf6N2E2_4452 0.43 -0.1
5,183,630 - Pf6N2E2_4452 0.60 +0.5
5,183,641 + Pf6N2E2_4452 0.61 -1.0
5,183,642 - Pf6N2E2_4452 0.61 -0.2
5,183,642 - Pf6N2E2_4452 0.61 -0.8
5,183,653 + Pf6N2E2_4452 0.62 +0.5
5,183,654 - Pf6N2E2_4452 0.62 -0.4
5,183,654 - Pf6N2E2_4452 0.62 +0.4
5,183,656 + Pf6N2E2_4452 0.62 +1.0
5,183,656 + Pf6N2E2_4452 0.62 -0.8
5,183,656 + Pf6N2E2_4452 0.62 +0.6
5,183,657 - Pf6N2E2_4452 0.62 +1.1
5,183,657 - Pf6N2E2_4452 0.62 -0.4
5,183,720 - Pf6N2E2_4452 0.68 -0.0
5,183,720 - Pf6N2E2_4452 0.68 +0.2
5,183,720 - Pf6N2E2_4452 0.68 +0.6
5,183,818 + Pf6N2E2_4452 0.78 -0.3
5,183,818 + Pf6N2E2_4452 0.78 +0.4
5,183,890 + Pf6N2E2_4452 0.85 +0.7
5,183,996 - -1.8
5,183,996 - -0.0
5,183,996 - -0.9
5,183,996 - -0.4
5,183,996 - -0.6
5,184,023 + -1.3
5,184,024 - -1.2
5,184,037 + +0.6
5,184,037 + +0.1
5,184,038 - -0.6
5,184,088 + -1.2
5,184,219 + -0.3
5,184,219 + +0.9
5,184,219 + -2.0
5,184,219 + -0.9
5,184,219 + -0.3
5,184,219 + -2.1
5,184,219 + -0.7
5,184,219 + -1.1
5,184,219 + +0.2
5,184,220 - -0.7
5,184,220 - -0.6
5,184,220 - -1.2
5,184,220 - -0.7
5,184,481 - Pf6N2E2_4453 0.19 -1.2
5,184,481 - Pf6N2E2_4453 0.19 -0.4
5,184,481 - Pf6N2E2_4453 0.19 -2.3
5,184,585 + Pf6N2E2_4453 0.24 +0.1
5,184,801 + Pf6N2E2_4453 0.34 +0.3
5,184,801 + Pf6N2E2_4453 0.34 -1.2
5,184,801 + Pf6N2E2_4453 0.34 -1.4
5,184,801 + Pf6N2E2_4453 0.34 +0.1
5,184,801 + Pf6N2E2_4453 0.34 -0.3
5,184,801 + Pf6N2E2_4453 0.34 -1.4
5,184,801 + Pf6N2E2_4453 0.34 -0.4
5,184,801 + Pf6N2E2_4453 0.34 +0.1
5,184,801 + Pf6N2E2_4453 0.34 -2.9
5,184,801 + Pf6N2E2_4453 0.34 -1.3
5,184,801 + Pf6N2E2_4453 0.34 -0.5
5,184,801 + Pf6N2E2_4453 0.34 -2.0
5,184,801 + Pf6N2E2_4453 0.34 -1.8
5,184,802 - Pf6N2E2_4453 0.34 -1.6
5,184,802 - Pf6N2E2_4453 0.34 -0.8
5,184,802 - Pf6N2E2_4453 0.34 -1.0
5,184,802 - Pf6N2E2_4453 0.34 +0.2
5,184,802 - Pf6N2E2_4453 0.34 -0.5
5,184,802 - Pf6N2E2_4453 0.34 +0.3
5,184,802 - Pf6N2E2_4453 0.34 -0.1
5,184,802 - Pf6N2E2_4453 0.34 -1.6
5,184,802 - Pf6N2E2_4453 0.34 -2.1
5,184,802 - Pf6N2E2_4453 0.34 -1.1
5,184,802 - Pf6N2E2_4453 0.34 -0.7
5,184,802 - Pf6N2E2_4453 0.34 -1.1
5,184,802 - Pf6N2E2_4453 0.34 +0.1
5,184,802 - Pf6N2E2_4453 0.34 -0.2
5,184,802 - Pf6N2E2_4453 0.34 -1.5
5,184,802 - Pf6N2E2_4453 0.34 -0.8
5,184,802 - Pf6N2E2_4453 0.34 -0.6
5,184,802 - Pf6N2E2_4453 0.34 -1.7
5,184,802 - Pf6N2E2_4453 0.34 -1.9
5,184,802 - Pf6N2E2_4453 0.34 -0.5
5,184,802 - Pf6N2E2_4453 0.34 -0.9
5,184,802 - Pf6N2E2_4453 0.34 -0.1
5,184,802 - Pf6N2E2_4453 0.34 -0.4
5,184,802 - Pf6N2E2_4453 0.34 -1.1
5,184,802 - Pf6N2E2_4453 0.34 +0.4
5,184,873 + Pf6N2E2_4453 0.37 -2.4
5,184,873 + Pf6N2E2_4453 0.37 -1.4
5,184,874 - Pf6N2E2_4453 0.37 -2.8
5,185,029 + Pf6N2E2_4453 0.44 -1.9
5,185,030 - Pf6N2E2_4453 0.44 -0.2
5,185,068 + Pf6N2E2_4453 0.46 -0.5
5,185,068 + Pf6N2E2_4453 0.46 -1.5
5,185,069 - Pf6N2E2_4453 0.46 -2.7
5,185,144 - Pf6N2E2_4453 0.49 -1.0
5,185,321 - Pf6N2E2_4453 0.57 -0.9
5,185,479 + Pf6N2E2_4453 0.64 -0.3
5,185,479 + Pf6N2E2_4453 0.64 -2.1
5,185,479 + Pf6N2E2_4453 0.64 -0.0
5,185,479 + Pf6N2E2_4453 0.64 -2.9
5,185,480 - Pf6N2E2_4453 0.64 -1.3
5,185,480 - Pf6N2E2_4453 0.64 -0.4
5,185,480 - Pf6N2E2_4453 0.64 -0.9
5,185,480 - Pf6N2E2_4453 0.64 -0.9
5,185,480 - Pf6N2E2_4453 0.64 -0.8
5,185,487 - Pf6N2E2_4453 0.65 -0.2
5,185,578 + Pf6N2E2_4453 0.69 -0.9
5,185,578 + Pf6N2E2_4453 0.69 -0.7
5,185,578 + Pf6N2E2_4453 0.69 -0.8
5,185,579 - Pf6N2E2_4453 0.69 -2.7
5,185,579 - Pf6N2E2_4453 0.69 -0.7
5,185,579 - Pf6N2E2_4453 0.69 -1.4
5,185,602 + Pf6N2E2_4453 0.70 -0.4
5,185,603 - Pf6N2E2_4453 0.70 -0.8
5,185,611 + Pf6N2E2_4453 0.70 -0.9
5,185,611 + Pf6N2E2_4453 0.70 -0.7
5,185,611 + Pf6N2E2_4453 0.70 -1.4
5,185,612 - Pf6N2E2_4453 0.70 -1.9
5,185,612 - Pf6N2E2_4453 0.70 -0.5
5,185,612 - Pf6N2E2_4453 0.70 -1.6
5,185,796 + Pf6N2E2_4453 0.78 +0.0
5,185,848 + Pf6N2E2_4453 0.81 -0.2
5,185,848 + Pf6N2E2_4453 0.81 -2.1
5,185,849 - Pf6N2E2_4453 0.81 -0.1
5,185,849 - Pf6N2E2_4453 0.81 +0.3
5,185,849 - Pf6N2E2_4453 0.81 -0.1
5,185,945 + Pf6N2E2_4453 0.85 -0.5
5,185,945 + Pf6N2E2_4453 0.85 -1.2
5,185,945 + Pf6N2E2_4453 0.85 -0.6
5,185,945 + Pf6N2E2_4453 0.85 -1.8
5,185,945 + Pf6N2E2_4453 0.85 -0.5
5,185,945 + Pf6N2E2_4453 0.85 -1.3
5,185,945 + Pf6N2E2_4453 0.85 +1.2
5,185,945 + Pf6N2E2_4453 0.85 -0.2
5,185,945 + Pf6N2E2_4453 0.85 -0.7
5,185,946 - Pf6N2E2_4453 0.85 -1.6
5,185,946 - Pf6N2E2_4453 0.85 -0.4
5,185,946 - Pf6N2E2_4453 0.85 +0.8
5,185,946 - Pf6N2E2_4453 0.85 -2.5
5,185,946 - Pf6N2E2_4453 0.85 -1.8
5,185,946 - Pf6N2E2_4453 0.85 -0.9
5,185,946 - Pf6N2E2_4453 0.85 -1.6
5,185,946 - Pf6N2E2_4453 0.85 -1.7
5,185,946 - Pf6N2E2_4453 0.85 -1.1
5,185,976 + Pf6N2E2_4453 0.87 -0.9
5,185,976 + Pf6N2E2_4453 0.87 -0.2
5,185,977 - Pf6N2E2_4453 0.87 -1.0
5,185,977 - Pf6N2E2_4453 0.87 -1.0
5,185,989 + Pf6N2E2_4453 0.87 -0.9
5,185,989 + Pf6N2E2_4453 0.87 -0.8
5,185,989 + Pf6N2E2_4453 0.87 -0.9
5,185,989 + Pf6N2E2_4453 0.87 -1.1
5,185,990 - Pf6N2E2_4453 0.87 -2.0
5,186,130 + -0.1
5,186,130 + -0.6
5,186,130 + -1.3
5,186,130 + +0.2
5,186,130 + -0.4
5,186,130 + -0.6
5,186,178 + +0.5
5,186,178 + -2.4
5,186,178 + -0.6
5,186,178 + -1.3
5,186,178 + -1.4
5,186,178 + -2.1
5,186,179 - -0.1
5,186,401 + -0.7
5,186,401 + +0.3
5,186,401 + +1.3
5,186,401 + -0.2
5,186,401 + +1.3
5,186,401 + +0.2
5,186,401 + -1.4
5,186,401 + +0.3
5,186,401 + +0.5
5,186,401 + -0.0
5,186,401 + -0.3
5,186,401 + -0.4
5,186,402 - -1.2
5,186,402 - -1.6
5,186,402 - -0.9
5,186,402 - -0.5
5,186,402 - -1.2
5,186,402 - -0.1
5,186,670 - Pf6N2E2_4454 0.17 +1.1
5,186,767 + Pf6N2E2_4454 0.23 +2.8
5,186,768 - Pf6N2E2_4454 0.23 +0.2
5,186,768 - Pf6N2E2_4454 0.23 +1.0
5,186,786 - Pf6N2E2_4454 0.24 -1.7
5,186,791 + Pf6N2E2_4454 0.25 +0.0
5,187,010 - Pf6N2E2_4454 0.39 -0.0
5,187,016 + Pf6N2E2_4454 0.40 +0.3
5,187,017 - Pf6N2E2_4454 0.40 +0.5

Or see this region's nucleotide sequence