Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3927

Experiment: Gjerstad humics 0.5 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gjerstad humics 0.5 M
4,563,357	+				-0.4
4,563,357	+				-1.5
4,563,518	+				+1.0
4,563,518	+				+0.6
4,563,519	-				+0.5
4,563,535	-				+1.1
4,563,535	-				-0.3
4,563,782	+		Pf6N2E2_3926	0.31	-0.0
4,563,782	+		Pf6N2E2_3926	0.31	+1.0
4,563,782	+		Pf6N2E2_3926	0.31	+1.4
4,564,017	-		Pf6N2E2_3926	0.60	+1.2
4,564,037	-		Pf6N2E2_3926	0.62	+0.9
4,564,100	+		Pf6N2E2_3926	0.70	+1.2
4,564,100	+		Pf6N2E2_3926	0.70	+0.3
4,564,119	+		Pf6N2E2_3926	0.72	+0.2
4,564,120	-		Pf6N2E2_3926	0.72	-0.5
4,564,136	+		Pf6N2E2_3926	0.74	+0.7
4,564,137	-		Pf6N2E2_3926	0.74	-0.3
4,564,137	-		Pf6N2E2_3926	0.74	-0.1
4,564,205	+		Pf6N2E2_3926	0.82	+1.6
4,564,205	+		Pf6N2E2_3926	0.82	-0.6
4,564,205	+		Pf6N2E2_3926	0.82	+0.9
4,564,205	+		Pf6N2E2_3926	0.82	-0.0
4,564,205	+		Pf6N2E2_3926	0.82	-1.5
4,564,206	-		Pf6N2E2_3926	0.82	-1.3
4,564,206	-		Pf6N2E2_3926	0.82	-0.0
4,564,206	-		Pf6N2E2_3926	0.82	+0.3
4,564,206	-		Pf6N2E2_3926	0.82	-0.6
4,564,274	+				-0.6
4,564,274	+				+0.4
4,564,274	+				-0.8
4,564,274	+				-0.7
4,564,275	-				-0.5
4,564,275	-				-0.1
4,564,275	-				+1.1
4,564,328	+				-0.8
4,564,328	+				-1.0
4,564,328	+				+0.0
4,564,329	-				+0.8
4,564,473	+		Pf6N2E2_3927	0.11	+1.4
4,564,473	+		Pf6N2E2_3927	0.11	+1.0
4,564,473	+		Pf6N2E2_3927	0.11	+1.2
4,564,473	+		Pf6N2E2_3927	0.11	-0.0
4,564,473	+		Pf6N2E2_3927	0.11	+0.8
4,564,474	-		Pf6N2E2_3927	0.11	+0.4
4,564,474	-		Pf6N2E2_3927	0.11	+1.0
4,564,474	-		Pf6N2E2_3927	0.11	+1.1
4,564,642	+		Pf6N2E2_3927	0.26	+1.1
4,564,642	+		Pf6N2E2_3927	0.26	+1.1
4,564,643	-		Pf6N2E2_3927	0.26	+2.2
4,565,186	-		Pf6N2E2_3927	0.74	-0.1
4,565,330	-		Pf6N2E2_3927	0.87	-0.5
4,565,377	+				+1.8
4,565,377	+				-0.9
4,565,377	+				-1.1
4,565,377	+				-0.4
4,565,377	+				+0.6
4,565,377	+				-0.9
4,565,378	-				-0.6
4,565,378	-				+1.3
4,565,466	+				-0.0
4,565,467	-				-2.5
4,565,467	-				+0.9
4,565,467	-				+1.5
4,565,483	+				+0.1
4,565,596	+		Pf6N2E2_3928	0.20	+1.0
4,565,596	+		Pf6N2E2_3928	0.20	+0.3
4,565,596	+		Pf6N2E2_3928	0.20	-0.3
4,565,596	+		Pf6N2E2_3928	0.20	+0.2
4,565,596	+		Pf6N2E2_3928	0.20	+0.1
4,565,596	+		Pf6N2E2_3928	0.20	+0.6
4,565,596	+		Pf6N2E2_3928	0.20	-0.4
4,565,597	-		Pf6N2E2_3928	0.20	-2.1
4,565,597	-		Pf6N2E2_3928	0.20	+0.4
4,565,597	-		Pf6N2E2_3928	0.20	+0.7
4,565,597	-		Pf6N2E2_3928	0.20	-0.6
4,565,597	-		Pf6N2E2_3928	0.20	-1.6
4,565,597	-		Pf6N2E2_3928	0.20	+1.4
4,565,597	-		Pf6N2E2_3928	0.20	-0.5
4,565,716	+		Pf6N2E2_3928	0.39	+0.5
4,565,716	+		Pf6N2E2_3928	0.39	-0.5
4,565,716	+		Pf6N2E2_3928	0.39	-0.5
4,565,716	+		Pf6N2E2_3928	0.39	-0.3
4,565,716	+		Pf6N2E2_3928	0.39	+0.1
4,565,716	+		Pf6N2E2_3928	0.39	+1.0
4,565,716	+		Pf6N2E2_3928	0.39	-0.6
4,565,716	+		Pf6N2E2_3928	0.39	-1.9
4,565,716	+		Pf6N2E2_3928	0.39	-0.7
4,565,716	+		Pf6N2E2_3928	0.39	+0.5
4,565,717	-		Pf6N2E2_3928	0.39	+0.4
4,565,717	-		Pf6N2E2_3928	0.39	+0.1
4,565,717	-		Pf6N2E2_3928	0.39	+1.2
4,565,717	-		Pf6N2E2_3928	0.39	+1.4
4,565,907	+		Pf6N2E2_3928	0.68	-0.3
4,565,907	+		Pf6N2E2_3928	0.68	+0.8
4,565,907	+		Pf6N2E2_3928	0.68	+0.3
4,565,908	-		Pf6N2E2_3928	0.68	+0.2
4,566,136	+				+1.4
4,566,136	+				-0.6
4,566,138	+				+0.5
4,566,138	+				-0.1
4,566,139	-				-1.7
4,566,230	-				+0.4
4,566,230	-				+0.2
4,566,288	+		Pf6N2E2_3929	0.18	+0.3
4,566,309	+		Pf6N2E2_3929	0.21	-0.2
4,566,309	+		Pf6N2E2_3929	0.21	+0.8
4,566,310	-		Pf6N2E2_3929	0.22	-1.9
4,566,310	-		Pf6N2E2_3929	0.22	-0.4
4,566,310	-		Pf6N2E2_3929	0.22	-2.5
4,566,310	-		Pf6N2E2_3929	0.22	-1.0