Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3889

Experiment: Gjerstad humics 0.5 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gjerstad humics 0.5 M
4,519,921	+		Pf6N2E2_3887	0.60	+0.6
4,519,922	-		Pf6N2E2_3887	0.60	-1.1
4,519,922	-		Pf6N2E2_3887	0.60	+0.4
4,519,951	+		Pf6N2E2_3887	0.65	+0.9
4,519,952	-		Pf6N2E2_3887	0.65	+0.9
4,520,153	+				-0.0
4,520,153	+				+0.6
4,520,153	+				-1.0
4,520,153	+				+0.2
4,520,153	+				-0.2
4,520,154	-				+0.9
4,520,154	-				+0.1
4,520,154	-				+0.4
4,520,154	-				-0.0
4,520,154	-				-0.9
4,520,154	-				-0.6
4,520,154	-				-0.0
4,520,312	+				+0.4
4,520,313	-				-0.3
4,520,316	+				-1.1
4,520,316	+				-0.1
4,520,316	+				-1.5
4,520,316	+				-0.7
4,520,316	+				+0.7
4,520,316	+				+0.7
4,520,316	+				-0.4
4,520,316	+				+0.7
4,520,317	-				+0.9
4,520,317	-				+0.9
4,520,317	-				-2.0
4,520,317	-				-0.5
4,520,317	-				+0.6
4,520,317	-				+0.1
4,520,317	-				+0.5
4,520,317	-				+1.0
4,520,317	-				+0.3
4,520,317	-				+0.3
4,520,317	-				-0.5
4,520,317	-				+0.1
4,520,386	+		Pf6N2E2_3888	0.19	+0.6
4,520,386	+		Pf6N2E2_3888	0.19	+1.0
4,520,386	+		Pf6N2E2_3888	0.19	+1.1
4,520,387	-		Pf6N2E2_3888	0.20	+0.4
4,520,387	-		Pf6N2E2_3888	0.20	-0.1
4,520,387	-		Pf6N2E2_3888	0.20	+0.1
4,520,387	-		Pf6N2E2_3888	0.20	+0.6
4,520,387	-		Pf6N2E2_3888	0.20	-0.1
4,520,387	-		Pf6N2E2_3888	0.20	+0.0
4,520,490	-		Pf6N2E2_3888	0.43	+0.9
4,520,568	+		Pf6N2E2_3888	0.61	+0.2
4,520,568	+		Pf6N2E2_3888	0.61	-1.1
4,520,569	-		Pf6N2E2_3888	0.61	-1.0
4,520,569	-		Pf6N2E2_3888	0.61	-0.1
4,520,645	+		Pf6N2E2_3888	0.78	-0.0
4,520,646	-		Pf6N2E2_3888	0.78	+1.0
4,520,646	-		Pf6N2E2_3888	0.78	+1.1
4,520,729	+				+0.4
4,520,735	+				+0.6
4,520,736	-				+0.1
4,520,736	-				+0.3
4,520,760	+				-0.4
4,520,760	+				+1.1
4,520,760	+				+0.3
4,520,761	-				+0.8
4,520,761	-				+0.5
4,520,761	-				-0.0
4,520,781	+				+1.0
4,520,782	-				+0.4
4,520,841	+				+0.4
4,520,841	+				+0.4
4,520,841	+				-0.7
4,521,097	+		Pf6N2E2_3889	0.25	-2.1
4,521,098	-		Pf6N2E2_3889	0.25	-1.8
4,521,304	-		Pf6N2E2_3889	0.48	-0.6
4,521,304	-		Pf6N2E2_3889	0.48	-1.1
4,521,310	+		Pf6N2E2_3889	0.49	-1.8
4,521,310	+		Pf6N2E2_3889	0.49	-0.2
4,521,379	+		Pf6N2E2_3889	0.57	+0.3
4,521,379	+		Pf6N2E2_3889	0.57	-0.2
4,521,380	-		Pf6N2E2_3889	0.57	+0.1
4,521,380	-		Pf6N2E2_3889	0.57	-0.2
4,521,392	-		Pf6N2E2_3889	0.58	-2.9
4,521,665	+		Pf6N2E2_3889	0.89	-0.7
4,521,666	-		Pf6N2E2_3889	0.89	-1.0
4,521,666	-		Pf6N2E2_3889	0.89	-1.0
4,521,788	+				+2.6
4,521,827	+				+0.9
4,521,827	+				+0.4
4,521,828	-				+0.1
4,521,828	-				-3.0
4,521,833	+				+0.0
4,521,833	+				+0.2
4,521,833	+				+0.4
4,521,833	+				+1.3
4,521,834	-				-0.9
4,521,839	+				+0.8
4,521,839	+				+0.6
4,521,839	+				+0.4
4,521,840	-				-1.8
4,521,840	-				-1.3
4,521,840	-				+1.1
4,521,855	+				-0.4
4,521,855	+				+0.9
4,521,855	+				-1.0
4,521,855	+				-0.7
4,521,856	-				-1.6
4,521,925	+				-1.5
4,521,932	-				-3.3
4,522,000	+		Pf6N2E2_3890	0.17	+0.7
4,522,000	+		Pf6N2E2_3890	0.17	-0.1
4,522,000	+		Pf6N2E2_3890	0.17	-0.5
4,522,001	-		Pf6N2E2_3890	0.17	+0.6
4,522,001	-		Pf6N2E2_3890	0.17	-1.1
4,522,108	+		Pf6N2E2_3890	0.30	-0.3
4,522,108	+		Pf6N2E2_3890	0.30	-0.9
4,522,108	+		Pf6N2E2_3890	0.30	-1.5
4,522,108	+		Pf6N2E2_3890	0.30	+0.9
4,522,108	+		Pf6N2E2_3890	0.30	-2.7
4,522,108	+		Pf6N2E2_3890	0.30	-0.4
4,522,108	+		Pf6N2E2_3890	0.30	-0.3
4,522,108	+		Pf6N2E2_3890	0.30	-1.3
4,522,108	+		Pf6N2E2_3890	0.30	+0.3
4,522,108	+		Pf6N2E2_3890	0.30	-2.0
4,522,109	-		Pf6N2E2_3890	0.30	-0.1
4,522,109	-		Pf6N2E2_3890	0.30	-0.6
4,522,109	-		Pf6N2E2_3890	0.30	-0.6
4,522,109	-		Pf6N2E2_3890	0.30	-1.5
4,522,109	-		Pf6N2E2_3890	0.30	+0.3
4,522,109	-		Pf6N2E2_3890	0.30	-2.0
4,522,109	-		Pf6N2E2_3890	0.30	-0.2
4,522,109	-		Pf6N2E2_3890	0.30	-1.3
4,522,239	-		Pf6N2E2_3890	0.46	-0.4
4,522,667	-				-0.2
4,522,667	-				-0.4
4,522,667	-				-0.2
4,522,734	+				-0.8
4,522,735	-				-2.8
4,522,744	-				-2.8
4,522,744	-				-1.2