Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2105

Experiment: Gjerstad humics 0.5 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gjerstad humics 0.5 M
2,503,078	+		Pf6N2E2_2104	0.40	-0.1
2,503,106	+		Pf6N2E2_2104	0.43	-0.0
2,503,107	-		Pf6N2E2_2104	0.43	+0.2
2,503,121	-		Pf6N2E2_2104	0.45	+1.0
2,503,251	+		Pf6N2E2_2104	0.57	-0.3
2,503,251	+		Pf6N2E2_2104	0.57	+1.3
2,503,251	+		Pf6N2E2_2104	0.57	-0.1
2,503,252	-		Pf6N2E2_2104	0.57	-1.0
2,503,252	-		Pf6N2E2_2104	0.57	+0.2
2,503,252	-		Pf6N2E2_2104	0.57	-1.9
2,503,255	+		Pf6N2E2_2104	0.58	+0.3
2,503,255	+		Pf6N2E2_2104	0.58	-0.5
2,503,255	+		Pf6N2E2_2104	0.58	-1.0
2,503,255	+		Pf6N2E2_2104	0.58	+0.2
2,503,255	+		Pf6N2E2_2104	0.58	+0.1
2,503,255	+		Pf6N2E2_2104	0.58	-0.4
2,503,255	+		Pf6N2E2_2104	0.58	+2.3
2,503,255	+		Pf6N2E2_2104	0.58	+1.8
2,503,255	+		Pf6N2E2_2104	0.58	-0.5
2,503,255	+		Pf6N2E2_2104	0.58	-0.1
2,503,255	+		Pf6N2E2_2104	0.58	-0.3
2,503,255	+		Pf6N2E2_2104	0.58	-0.3
2,503,256	-		Pf6N2E2_2104	0.58	-0.2
2,503,256	-		Pf6N2E2_2104	0.58	+0.6
2,503,256	-		Pf6N2E2_2104	0.58	+0.3
2,503,256	-		Pf6N2E2_2104	0.58	+1.3
2,503,256	-		Pf6N2E2_2104	0.58	+0.1
2,503,256	-		Pf6N2E2_2104	0.58	+0.6
2,503,256	-		Pf6N2E2_2104	0.58	+0.7
2,503,256	-		Pf6N2E2_2104	0.58	-0.5
2,503,256	-		Pf6N2E2_2104	0.58	+0.6
2,503,258	+		Pf6N2E2_2104	0.58	-0.8
2,503,258	+		Pf6N2E2_2104	0.58	+0.1
2,503,259	-		Pf6N2E2_2104	0.58	-0.1
2,503,331	-		Pf6N2E2_2104	0.65	+0.4
2,503,400	-		Pf6N2E2_2104	0.72	-0.7
2,503,438	+		Pf6N2E2_2104	0.76	+1.3
2,503,480	+		Pf6N2E2_2104	0.80	+0.7
2,503,481	-		Pf6N2E2_2104	0.80	-2.2
2,503,520	-		Pf6N2E2_2104	0.84	-0.5
2,503,607	+				-0.8
2,503,607	+				-1.7
2,503,659	-				-0.6
2,503,726	+				-0.2
2,503,727	-				+0.5
2,503,728	+				+0.9
2,503,728	+				+1.2
2,503,728	+				-0.4
2,503,728	+				+0.1
2,503,728	+				+0.8
2,503,728	+				+1.3
2,503,728	+				-0.7
2,503,728	+				+0.9
2,503,728	+				+0.9
2,503,728	+				-1.2
2,503,728	+				-0.6
2,503,728	+				-0.6
2,503,728	+				-1.2
2,503,728	+				+0.0
2,503,728	+				+0.2
2,503,728	+				-0.2
2,503,729	-				-0.4
2,503,729	-				-1.3
2,503,729	-				+0.9
2,503,729	-				+1.7
2,503,729	-				-0.1
2,503,729	-				-2.0
2,503,729	-				+1.4
2,503,729	-				-0.6
2,503,729	-				+0.1
2,503,729	-				+0.6
2,503,729	-				-1.5
2,503,729	-				+0.2
2,503,729	-				-0.0
2,503,729	-				+1.5
2,503,729	-				+0.3
2,503,729	-				+0.8
2,503,729	-				-0.5
2,503,729	-				-0.8
2,503,740	+				-1.5
2,503,755	+				+0.1
2,503,756	-				-0.0
2,503,806	-				-0.1
2,503,806	-				-0.8
2,504,267	+		Pf6N2E2_2105	0.50	+1.2
2,504,267	+		Pf6N2E2_2105	0.50	-0.4
2,504,267	+		Pf6N2E2_2105	0.50	+0.0
2,504,267	+		Pf6N2E2_2105	0.50	+0.4
2,504,267	+		Pf6N2E2_2105	0.50	+0.6
2,504,267	+		Pf6N2E2_2105	0.50	+0.8
2,504,268	-		Pf6N2E2_2105	0.50	+0.5
2,504,268	-		Pf6N2E2_2105	0.50	-0.5
2,504,365	-		Pf6N2E2_2105	0.61	-0.1
2,504,365	-				+1.3
2,504,568	-		Pf6N2E2_2105	0.85	+0.1
2,504,632	+				+0.5
2,504,632	+				-1.7
2,504,633	-				-0.6
2,504,830	-		Pf6N2E2_2106	0.72	+1.4
2,504,830	-		Pf6N2E2_2106	0.72	+0.0
2,504,893	+				-0.4
2,504,893	+				-0.3
2,504,901	-				-2.0
2,504,946	+				+1.6
2,505,008	+				+0.6
2,505,010	+				-0.3
2,505,010	+				-0.9
2,505,010	+				-0.1
2,505,010	+				+0.7
2,505,012	+				-0.7
2,505,012	+				-0.3
2,505,012	+				+0.1
2,505,012	+				+0.4
2,505,012	+				-0.0
2,505,012	+				-0.9
2,505,012	+				+0.2
2,505,012	+				-0.2
2,505,012	+				-0.0
2,505,013	-				-0.3
2,505,013	-				-1.0
2,505,013	-				+0.7
2,505,067	+				-1.2
2,505,068	-				+0.0
2,505,068	-				-0.6
2,505,068	-				+0.6
2,505,419	+				+0.4
2,505,420	-				-0.3
2,505,420	-				-0.3
2,505,453	+				+0.2
2,505,453	+				-0.4
2,505,454	-				+0.6
2,505,454	-				+0.3
2,505,454	-				-0.7
2,505,460	+				+0.9
2,505,486	+				-0.3
2,505,517	-				+0.1
2,505,560	+				-0.3
2,505,561	-				+1.3
2,505,584	-				-0.9
2,505,597	-				-0.3
2,505,597	-				-0.3
2,505,599	+				-0.5
2,505,600	-				-0.0