Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3341 and Dsui_3342 are separated by 15 nucleotides Dsui_3342 and Dsui_3343 overlap by 1 nucleotides Dsui_3343 and Dsui_3344 are separated by 61 nucleotides
Dsui_3341: Dsui_3341 - lipopolysaccharide heptosyltransferase II, at 3,580,266 to 3,581,273
_3341
Dsui_3342: Dsui_3342 - ketosteroid isomerase-like enzyme, at 3,581,289 to 3,581,726
_3342
Dsui_3343: Dsui_3343 - putative hydrolase of the alpha/beta-hydrolase fold protein, at 3,581,726 to 3,582,718
_3343
Dsui_3344: Dsui_3344 - phosphomannomutase, at 3,582,780 to 3,584,174
_3344
Position (kb)
3581
3582
3583 Strain fitness (log2 ratio)
-2
-1
0
1 at 3581.282 kb on - strand at 3581.295 kb on + strand at 3581.343 kb on + strand, within Dsui_3342 at 3581.343 kb on + strand, within Dsui_3342 at 3581.343 kb on + strand, within Dsui_3342 at 3581.457 kb on + strand, within Dsui_3342 at 3581.541 kb on + strand, within Dsui_3342 at 3581.579 kb on - strand, within Dsui_3342 at 3581.776 kb on + strand at 3581.813 kb on + strand at 3581.864 kb on + strand, within Dsui_3343 at 3581.894 kb on + strand at 3581.900 kb on + strand, within Dsui_3343 at 3581.902 kb on - strand at 3582.315 kb on - strand at 3582.315 kb on - strand at 3582.333 kb on + strand, within Dsui_3343 at 3582.475 kb on - strand, within Dsui_3343 at 3582.540 kb on - strand at 3582.571 kb on - strand at 3582.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,581,282 - -0.8 3,581,295 + -0.5 3,581,343 + Dsui_3342 0.12 -0.3 3,581,343 + Dsui_3342 0.12 -0.1 3,581,343 + Dsui_3342 0.12 -0.4 3,581,457 + Dsui_3342 0.38 -0.4 3,581,541 + Dsui_3342 0.58 -0.2 3,581,579 - Dsui_3342 0.66 -1.2 3,581,776 + -1.8 3,581,813 + -1.2 3,581,864 + Dsui_3343 0.14 +0.8 3,581,894 + -0.8 3,581,900 + Dsui_3343 0.18 -0.8 3,581,902 - +0.8 3,582,315 - -0.8 3,582,315 - +0.8 3,582,333 + Dsui_3343 0.61 -0.8 3,582,475 - Dsui_3343 0.75 -2.7 3,582,540 - -0.2 3,582,571 - -0.2 3,582,587 - -0.2
Or see this region's nucleotide sequence