Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3097 and Dsui_3098 overlap by 4 nucleotides Dsui_3098 and Dsui_3099 overlap by 4 nucleotides Dsui_3099 and Dsui_3100 are separated by 7 nucleotides
Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552
_3097
Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211
_3098
Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188
_3099
Dsui_3100: Dsui_3100 - putative permease, at 3,318,196 to 3,319,125
_3100
Position (kb)
3317
3318
3319 Strain fitness (log2 ratio)
-2
-1
0
1 at 3316.342 kb on + strand, within Dsui_3097 at 3316.342 kb on + strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand at 3316.350 kb on - strand at 3316.529 kb on + strand at 3316.534 kb on + strand at 3316.534 kb on + strand at 3316.542 kb on - strand at 3316.554 kb on - strand at 3316.601 kb on - strand at 3316.726 kb on + strand at 3316.847 kb on - strand, within Dsui_3098 at 3317.183 kb on + strand at 3317.362 kb on + strand at 3317.417 kb on + strand at 3317.425 kb on - strand at 3317.429 kb on + strand, within Dsui_3099 at 3317.443 kb on + strand at 3317.566 kb on + strand, within Dsui_3099 at 3317.690 kb on - strand at 3317.690 kb on - strand at 3317.695 kb on - strand at 3317.789 kb on + strand, within Dsui_3099 at 3317.974 kb on + strand, within Dsui_3099 at 3317.993 kb on + strand, within Dsui_3099 at 3318.063 kb on + strand, within Dsui_3099 at 3318.210 kb on + strand at 3318.210 kb on + strand at 3318.218 kb on - strand at 3318.218 kb on - strand at 3318.724 kb on + strand at 3319.004 kb on - strand at 3319.047 kb on + strand at 3319.166 kb on + strand at 3319.166 kb on + strand at 3319.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,316,342 + Dsui_3097 0.83 -0.3 3,316,342 + Dsui_3097 0.83 -0.2 3,316,350 - Dsui_3097 0.83 -2.3 3,316,350 - Dsui_3097 0.83 -0.7 3,316,350 - -1.7 3,316,350 - +0.9 3,316,529 + -1.5 3,316,534 + -0.1 3,316,534 + -1.1 3,316,542 - +0.9 3,316,554 - -0.7 3,316,601 - -1.1 3,316,726 + +0.9 3,316,847 - Dsui_3098 0.45 -1.1 3,317,183 + -0.7 3,317,362 + +0.9 3,317,417 + +0.9 3,317,425 - -0.7 3,317,429 + Dsui_3099 0.23 -1.5 3,317,443 + -0.1 3,317,566 + Dsui_3099 0.36 -0.1 3,317,690 - +0.9 3,317,690 - -1.7 3,317,695 - -0.7 3,317,789 + Dsui_3099 0.59 -1.1 3,317,974 + Dsui_3099 0.78 -2.5 3,317,993 + Dsui_3099 0.80 -1.5 3,318,063 + Dsui_3099 0.87 -2.1 3,318,210 + -0.7 3,318,210 + -0.1 3,318,218 - -0.1 3,318,218 - -0.7 3,318,724 + +0.9 3,319,004 - -0.1 3,319,047 + +0.9 3,319,166 + -0.7 3,319,166 + -0.1 3,319,166 + -0.1
Or see this region's nucleotide sequence