Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2892 and Dsui_2893 are separated by 67 nucleotides Dsui_2893 and Dsui_2894 are separated by 103 nucleotides
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172
_2893
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Position (kb)
3092
3093
3094
3095 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3092.680 kb on - strand at 3092.963 kb on - strand, within Dsui_2893 at 3092.991 kb on + strand at 3093.092 kb on + strand, within Dsui_2893 at 3093.094 kb on - strand, within Dsui_2893 at 3093.129 kb on + strand at 3093.169 kb on - strand, within Dsui_2893 at 3093.180 kb on - strand, within Dsui_2893 at 3093.317 kb on + strand at 3093.358 kb on + strand at 3093.445 kb on - strand, within Dsui_2893 at 3093.631 kb on - strand, within Dsui_2893 at 3093.709 kb on - strand, within Dsui_2893 at 3093.713 kb on + strand, within Dsui_2893 at 3094.029 kb on + strand at 3094.042 kb on - strand at 3094.084 kb on - strand at 3094.105 kb on - strand at 3094.133 kb on + strand at 3094.141 kb on - strand at 3094.344 kb on + strand at 3094.421 kb on - strand at 3094.550 kb on + strand, within Dsui_2894 at 3094.595 kb on + strand at 3094.666 kb on + strand at 3094.674 kb on - strand, within Dsui_2894 at 3094.734 kb on - strand, within Dsui_2894 at 3094.800 kb on - strand, within Dsui_2894 at 3094.827 kb on - strand, within Dsui_2894 at 3094.878 kb on - strand, within Dsui_2894 at 3094.946 kb on - strand, within Dsui_2894 at 3094.952 kb on + strand at 3095.047 kb on - strand, within Dsui_2894 at 3095.094 kb on - strand, within Dsui_2894
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,092,680 - -0.1 3,092,963 - Dsui_2893 0.20 +0.9 3,092,991 + +0.9 3,093,092 + Dsui_2893 0.28 -2.1 3,093,094 - Dsui_2893 0.28 -0.1 3,093,129 + +0.9 3,093,169 - Dsui_2893 0.33 -2.3 3,093,180 - Dsui_2893 0.34 -2.7 3,093,317 + +0.9 3,093,358 + +0.9 3,093,445 - Dsui_2893 0.52 -1.7 3,093,631 - Dsui_2893 0.64 -3.5 3,093,709 - Dsui_2893 0.69 -0.1 3,093,713 + Dsui_2893 0.70 -0.7 3,094,029 + -0.1 3,094,042 - +0.1 3,094,084 - -0.3 3,094,105 - +0.2 3,094,133 + +0.9 3,094,141 - -0.7 3,094,344 + +0.9 3,094,421 - +0.9 3,094,550 + Dsui_2894 0.13 +0.9 3,094,595 + +0.9 3,094,666 + +0.9 3,094,674 - Dsui_2894 0.18 -0.7 3,094,734 - Dsui_2894 0.21 +0.9 3,094,800 - Dsui_2894 0.24 +0.9 3,094,827 - Dsui_2894 0.25 +0.9 3,094,878 - Dsui_2894 0.28 -1.1 3,094,946 - Dsui_2894 0.31 -1.1 3,094,952 + +0.9 3,095,047 - Dsui_2894 0.36 -0.7 3,095,094 - Dsui_2894 0.38 -0.7
Or see this region's nucleotide sequence