Strain Fitness in Dechlorosoma suillum PS around Dsui_2878

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2876 and Dsui_2877 overlap by 1 nucleotidesDsui_2877 and Dsui_2878 overlap by 7 nucleotidesDsui_2878 and Dsui_2879 are separated by 318 nucleotides Dsui_2876: Dsui_2876 - RND family efflux transporter, MFP subunit, at 3,070,474 to 3,071,730 _2876 Dsui_2877: Dsui_2877 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,071,730 to 3,072,476 _2877 Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690 _2878 Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505 _2879 Position (kb) 3072 3073 3074Strain fitness (log2 ratio) -2 -1 0 1at 3071.523 kb on + strand, within Dsui_2876at 3071.800 kb on - strandat 3071.813 kb on - strand, within Dsui_2877at 3071.921 kb on - strandat 3071.931 kb on - strandat 3072.069 kb on - strandat 3072.076 kb on - strandat 3072.148 kb on + strand, within Dsui_2877at 3072.187 kb on - strand, within Dsui_2877at 3072.246 kb on + strand, within Dsui_2877at 3072.310 kb on - strandat 3072.358 kb on + strand, within Dsui_2877at 3072.358 kb on + strand, within Dsui_2877at 3072.599 kb on + strand, within Dsui_2878at 3072.711 kb on + strand, within Dsui_2878at 3072.781 kb on - strand, within Dsui_2878at 3072.883 kb on - strandat 3072.897 kb on + strand, within Dsui_2878at 3073.085 kb on + strand, within Dsui_2878at 3073.228 kb on - strand, within Dsui_2878at 3073.417 kb on + strand, within Dsui_2878at 3073.514 kb on - strand, within Dsui_2878at 3073.715 kb on - strandat 3073.716 kb on + strandat 3073.729 kb on + strandat 3073.764 kb on + strandat 3073.805 kb on - strandat 3073.821 kb on + strandat 3073.829 kb on - strandat 3074.155 kb on - strandat 3074.588 kb on + strand, within Dsui_2879at 3074.685 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
3,071,523 + Dsui_2876 0.83 -0.9
3,071,800 - +0.9
3,071,813 - Dsui_2877 0.11 -2.5
3,071,921 - +0.9
3,071,931 - -0.1
3,072,069 - -0.1
3,072,076 - +0.9
3,072,148 + Dsui_2877 0.56 -0.7
3,072,187 - Dsui_2877 0.61 -1.4
3,072,246 + Dsui_2877 0.69 -1.1
3,072,310 - +0.9
3,072,358 + Dsui_2877 0.84 -0.7
3,072,358 + Dsui_2877 0.84 -0.7
3,072,599 + Dsui_2878 0.11 +0.4
3,072,711 + Dsui_2878 0.20 -1.4
3,072,781 - Dsui_2878 0.25 -0.1
3,072,883 - -0.1
3,072,897 + Dsui_2878 0.35 -0.1
3,073,085 + Dsui_2878 0.50 -1.1
3,073,228 - Dsui_2878 0.62 -0.7
3,073,417 + Dsui_2878 0.78 +0.6
3,073,514 - Dsui_2878 0.86 -1.9
3,073,715 - +0.9
3,073,716 + -1.9
3,073,729 + -0.7
3,073,764 + +0.9
3,073,805 - +0.9
3,073,821 + -0.1
3,073,829 - -2.1
3,074,155 - -0.2
3,074,588 + Dsui_2879 0.39 -0.1
3,074,685 + +0.9

Or see this region's nucleotide sequence