Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2398 and Dsui_2399 are separated by 62 nucleotides Dsui_2399 and Dsui_2400 are separated by 4 nucleotides Dsui_2400 and Dsui_2401 are separated by 13 nucleotides
Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801
_2398
Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514
_2399
Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847
_2400
Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595
_2401
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-2
-1
0
1 at 2551.544 kb on + strand at 2551.634 kb on + strand, within Dsui_2398 at 2551.704 kb on + strand at 2551.941 kb on - strand at 2552.101 kb on - strand, within Dsui_2399 at 2552.124 kb on - strand at 2552.160 kb on - strand at 2552.170 kb on - strand at 2552.174 kb on + strand at 2552.316 kb on - strand, within Dsui_2399 at 2552.629 kb on + strand at 2552.632 kb on - strand at 2552.714 kb on - strand, within Dsui_2400 at 2553.100 kb on - strand, within Dsui_2400 at 2553.186 kb on + strand at 2553.220 kb on - strand, within Dsui_2400 at 2553.322 kb on + strand, within Dsui_2400 at 2553.330 kb on - strand, within Dsui_2400 at 2553.373 kb on - strand, within Dsui_2400 at 2553.380 kb on - strand, within Dsui_2400 at 2553.485 kb on + strand at 2553.528 kb on + strand at 2553.586 kb on + strand at 2553.587 kb on - strand, within Dsui_2400 at 2553.650 kb on + strand at 2553.715 kb on - strand at 2553.737 kb on - strand at 2554.000 kb on - strand, within Dsui_2401 at 2554.029 kb on + strand at 2554.075 kb on + strand at 2554.162 kb on - strand, within Dsui_2401 at 2554.259 kb on - strand, within Dsui_2401 at 2554.284 kb on - strand, within Dsui_2401 at 2554.485 kb on - strand, within Dsui_2401 at 2554.680 kb on + strand at 2554.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,551,544 + +0.8 2,551,634 + Dsui_2398 0.83 -2.2 2,551,704 + -1.5 2,551,941 - +0.8 2,552,101 - Dsui_2399 0.36 -0.8 2,552,124 - -0.2 2,552,160 - +0.8 2,552,170 - +0.8 2,552,174 + -0.2 2,552,316 - Dsui_2399 0.69 +0.8 2,552,629 + +0.8 2,552,632 - -0.8 2,552,714 - Dsui_2400 0.15 -0.8 2,553,100 - Dsui_2400 0.44 -1.8 2,553,186 + +0.8 2,553,220 - Dsui_2400 0.53 -0.8 2,553,322 + Dsui_2400 0.60 -1.8 2,553,330 - Dsui_2400 0.61 -0.5 2,553,373 - Dsui_2400 0.64 -0.2 2,553,380 - Dsui_2400 0.65 -1.4 2,553,485 + -1.5 2,553,528 + +0.8 2,553,586 + +0.8 2,553,587 - Dsui_2400 0.80 -1.5 2,553,650 + -0.2 2,553,715 - -1.2 2,553,737 - -0.2 2,554,000 - Dsui_2401 0.19 -1.1 2,554,029 + -0.2 2,554,075 + -0.2 2,554,162 - Dsui_2401 0.41 -0.2 2,554,259 - Dsui_2401 0.54 +0.2 2,554,284 - Dsui_2401 0.58 -1.7 2,554,485 - Dsui_2401 0.85 -2.5 2,554,680 + -1.8 2,554,719 - +0.8
Or see this region's nucleotide sequence