Strain Fitness in Dechlorosoma suillum PS around Dsui_2400

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2398 and Dsui_2399 are separated by 62 nucleotidesDsui_2399 and Dsui_2400 are separated by 4 nucleotidesDsui_2400 and Dsui_2401 are separated by 13 nucleotides Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801 _2398 Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514 _2399 Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847 _2400 Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595 _2401 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -2 -1 0 1at 2551.544 kb on + strandat 2551.634 kb on + strand, within Dsui_2398at 2551.704 kb on + strandat 2551.941 kb on - strandat 2552.101 kb on - strand, within Dsui_2399at 2552.124 kb on - strandat 2552.160 kb on - strandat 2552.170 kb on - strandat 2552.174 kb on + strandat 2552.316 kb on - strand, within Dsui_2399at 2552.629 kb on + strandat 2552.632 kb on - strandat 2552.714 kb on - strand, within Dsui_2400at 2553.100 kb on - strand, within Dsui_2400at 2553.186 kb on + strandat 2553.220 kb on - strand, within Dsui_2400at 2553.322 kb on + strand, within Dsui_2400at 2553.330 kb on - strand, within Dsui_2400at 2553.373 kb on - strand, within Dsui_2400at 2553.380 kb on - strand, within Dsui_2400at 2553.485 kb on + strandat 2553.528 kb on + strandat 2553.586 kb on + strandat 2553.587 kb on - strand, within Dsui_2400at 2553.650 kb on + strandat 2553.715 kb on - strandat 2553.737 kb on - strandat 2554.000 kb on - strand, within Dsui_2401at 2554.029 kb on + strandat 2554.075 kb on + strandat 2554.162 kb on - strand, within Dsui_2401at 2554.259 kb on - strand, within Dsui_2401at 2554.284 kb on - strand, within Dsui_2401at 2554.485 kb on - strand, within Dsui_2401at 2554.680 kb on + strandat 2554.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,551,544 + +0.8
2,551,634 + Dsui_2398 0.83 -2.2
2,551,704 + -1.5
2,551,941 - +0.8
2,552,101 - Dsui_2399 0.36 -0.8
2,552,124 - -0.2
2,552,160 - +0.8
2,552,170 - +0.8
2,552,174 + -0.2
2,552,316 - Dsui_2399 0.69 +0.8
2,552,629 + +0.8
2,552,632 - -0.8
2,552,714 - Dsui_2400 0.15 -0.8
2,553,100 - Dsui_2400 0.44 -1.8
2,553,186 + +0.8
2,553,220 - Dsui_2400 0.53 -0.8
2,553,322 + Dsui_2400 0.60 -1.8
2,553,330 - Dsui_2400 0.61 -0.5
2,553,373 - Dsui_2400 0.64 -0.2
2,553,380 - Dsui_2400 0.65 -1.4
2,553,485 + -1.5
2,553,528 + +0.8
2,553,586 + +0.8
2,553,587 - Dsui_2400 0.80 -1.5
2,553,650 + -0.2
2,553,715 - -1.2
2,553,737 - -0.2
2,554,000 - Dsui_2401 0.19 -1.1
2,554,029 + -0.2
2,554,075 + -0.2
2,554,162 - Dsui_2401 0.41 -0.2
2,554,259 - Dsui_2401 0.54 +0.2
2,554,284 - Dsui_2401 0.58 -1.7
2,554,485 - Dsui_2401 0.85 -2.5
2,554,680 + -1.8
2,554,719 - +0.8

Or see this region's nucleotide sequence