Strain Fitness in Dechlorosoma suillum PS around Dsui_2337

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2335 and Dsui_2336 overlap by 4 nucleotidesDsui_2336 and Dsui_2337 are separated by 383 nucleotidesDsui_2337 and Dsui_2339 are separated by 254 nucleotides Dsui_2335: Dsui_2335 - Integral membrane protein CcmA involved in cell shape determination, at 2,488,704 to 2,489,153 _2335 Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743 _2336 Dsui_2337: Dsui_2337 - putative Fe-S oxidoreductase, at 2,490,127 to 2,490,468 _2337 Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634 _2339 Position (kb) 2490 2491Strain fitness (log2 ratio) -2 -1 0 1at 2489.130 kb on + strandat 2489.230 kb on + strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.280 kb on - strand, within Dsui_2336at 2489.285 kb on - strand, within Dsui_2336at 2489.411 kb on - strand, within Dsui_2336at 2489.443 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.554 kb on + strand, within Dsui_2336at 2489.648 kb on + strand, within Dsui_2336at 2489.711 kb on - strandat 2489.805 kb on - strandat 2489.859 kb on + strandat 2489.986 kb on + strandat 2490.040 kb on + strandat 2490.087 kb on + strandat 2490.523 kb on + strandat 2490.523 kb on + strandat 2490.613 kb on + strandat 2490.674 kb on + strandat 2490.692 kb on + strandat 2490.743 kb on - strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.820 kb on - strandat 2490.820 kb on - strandat 2490.850 kb on + strand, within Dsui_2339at 2490.990 kb on - strand, within Dsui_2339at 2491.033 kb on + strand, within Dsui_2339at 2491.041 kb on + strandat 2491.051 kb on + strand, within Dsui_2339at 2491.087 kb on - strandat 2491.190 kb on - strand, within Dsui_2339at 2491.240 kb on - strandat 2491.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,489,130 + +0.8
2,489,230 + Dsui_2336 0.13 -2.2
2,489,238 - Dsui_2336 0.15 -0.2
2,489,238 - Dsui_2336 0.15 -0.2
2,489,238 - Dsui_2336 0.15 -0.6
2,489,280 - Dsui_2336 0.22 +0.3
2,489,285 - Dsui_2336 0.23 -0.2
2,489,411 - Dsui_2336 0.44 -0.0
2,489,443 - Dsui_2336 0.49 +0.3
2,489,469 - Dsui_2336 0.54 -0.0
2,489,469 - Dsui_2336 0.54 -0.2
2,489,469 - Dsui_2336 0.54 -0.1
2,489,469 - Dsui_2336 0.54 +0.3
2,489,554 + Dsui_2336 0.68 -0.2
2,489,648 + Dsui_2336 0.84 -0.2
2,489,711 - -0.2
2,489,805 - -0.6
2,489,859 + +0.8
2,489,986 + +0.8
2,490,040 + +0.8
2,490,087 + -1.1
2,490,523 + -0.2
2,490,523 + -0.2
2,490,613 + -0.2
2,490,674 + -0.4
2,490,692 + -1.1
2,490,743 - +0.8
2,490,812 + -1.2
2,490,812 + +0.8
2,490,812 + -0.2
2,490,820 - +0.8
2,490,820 - +0.8
2,490,850 + Dsui_2339 0.14 -0.8
2,490,990 - Dsui_2339 0.29 -1.2
2,491,033 + Dsui_2339 0.34 -0.2
2,491,041 + +0.8
2,491,051 + Dsui_2339 0.36 -0.5
2,491,087 - -0.8
2,491,190 - Dsui_2339 0.51 -1.5
2,491,240 - -1.5
2,491,431 - +0.8

Or see this region's nucleotide sequence