Strain Fitness in Dechlorosoma suillum PS around Dsui_2186

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2184 and Dsui_2185 are separated by 71 nucleotidesDsui_2185 and Dsui_2186 are separated by 185 nucleotidesDsui_2186 and Dsui_2187 are separated by 70 nucleotides Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282 _2184 Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926 _2185 Dsui_2186: Dsui_2186 - Protein of unknown function (DUF3567), at 2,321,112 to 2,321,345 _2186 Dsui_2187: Dsui_2187 - acyl-CoA synthetase/AMP-acid ligase, at 2,321,416 to 2,323,113 _2187 Position (kb) 2321 2322Strain fitness (log2 ratio) -2 -1 0 1at 2320.260 kb on - strandat 2320.299 kb on - strandat 2320.402 kb on + strandat 2320.425 kb on + strand, within Dsui_2185at 2320.477 kb on - strandat 2320.619 kb on - strand, within Dsui_2185at 2320.650 kb on + strandat 2320.697 kb on + strandat 2320.784 kb on + strand, within Dsui_2185at 2320.901 kb on - strandat 2320.978 kb on + strandat 2321.011 kb on + strandat 2321.018 kb on - strandat 2321.045 kb on - strandat 2321.155 kb on + strand, within Dsui_2186at 2321.317 kb on + strand, within Dsui_2186at 2321.353 kb on - strandat 2321.435 kb on - strandat 2321.534 kb on + strandat 2321.542 kb on - strandat 2321.542 kb on - strandat 2321.660 kb on - strandat 2321.833 kb on - strandat 2321.852 kb on + strandat 2322.053 kb on - strand, within Dsui_2187at 2322.108 kb on + strand, within Dsui_2187at 2322.112 kb on - strandat 2322.161 kb on + strand, within Dsui_2187

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
2,320,260 - -1.8
2,320,299 - -1.0
2,320,402 + -0.0
2,320,425 + Dsui_2185 0.12 -0.6
2,320,477 - +1.0
2,320,619 - Dsui_2185 0.46 -0.0
2,320,650 + +1.0
2,320,697 + +1.0
2,320,784 + Dsui_2185 0.75 -0.6
2,320,901 - +1.0
2,320,978 + +1.0
2,321,011 + +0.4
2,321,018 - +1.0
2,321,045 - -0.0
2,321,155 + Dsui_2186 0.18 -0.3
2,321,317 + Dsui_2186 0.88 -0.3
2,321,353 - +1.0
2,321,435 - -1.0
2,321,534 + +1.0
2,321,542 - -1.0
2,321,542 - -0.0
2,321,660 - -0.6
2,321,833 - +1.0
2,321,852 + +1.0
2,322,053 - Dsui_2187 0.38 -1.3
2,322,108 + Dsui_2187 0.41 +1.0
2,322,112 - -0.6
2,322,161 + Dsui_2187 0.44 +1.0

Or see this region's nucleotide sequence