Strain Fitness in Dechlorosoma suillum PS around Dsui_2128

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2126 and Dsui_2127 are separated by 67 nucleotidesDsui_2127 and Dsui_2128 are separated by 143 nucleotidesDsui_2128 and Dsui_2129 are separated by 84 nucleotidesDsui_2129 and Dsui_2130 are separated by 299 nucleotides Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574 _2126 Dsui_2127: Dsui_2127 - flavodoxin reductase family protein, at 2,255,642 to 2,256,430 _2127 Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795 _2128 Dsui_2129: Dsui_2129 - bacterial nucleoid DNA-binding protein, at 2,259,880 to 2,260,164 _2129 Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713 _2130 Position (kb) 2256 2257 2258 2259 2260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2255.847 kb on - strandat 2255.990 kb on - strandat 2256.090 kb on - strand, within Dsui_2127at 2256.123 kb on - strandat 2256.128 kb on - strandat 2256.128 kb on - strand, within Dsui_2127at 2256.172 kb on + strand, within Dsui_2127at 2256.440 kb on + strandat 2256.440 kb on + strandat 2256.448 kb on - strandat 2256.448 kb on - strandat 2256.491 kb on + strandat 2256.499 kb on - strandat 2256.571 kb on + strandat 2256.626 kb on - strandat 2256.651 kb on + strandat 2256.745 kb on + strandat 2256.762 kb on + strandat 2256.770 kb on - strandat 2256.827 kb on - strandat 2256.910 kb on + strand, within Dsui_2128at 2256.986 kb on + strand, within Dsui_2128at 2257.181 kb on - strand, within Dsui_2128at 2257.276 kb on + strand, within Dsui_2128at 2257.304 kb on + strand, within Dsui_2128at 2257.322 kb on - strand, within Dsui_2128at 2257.457 kb on - strandat 2257.469 kb on + strandat 2257.581 kb on + strand, within Dsui_2128at 2257.589 kb on - strandat 2257.689 kb on + strand, within Dsui_2128at 2257.840 kb on - strand, within Dsui_2128at 2257.944 kb on + strand, within Dsui_2128at 2258.089 kb on + strand, within Dsui_2128at 2258.446 kb on - strandat 2258.462 kb on + strand, within Dsui_2128at 2258.586 kb on + strand, within Dsui_2128at 2258.648 kb on + strand, within Dsui_2128at 2258.687 kb on + strand, within Dsui_2128at 2258.841 kb on + strand, within Dsui_2128at 2258.878 kb on - strandat 2258.906 kb on - strandat 2258.947 kb on + strand, within Dsui_2128at 2258.970 kb on - strand, within Dsui_2128at 2258.984 kb on + strand, within Dsui_2128at 2259.055 kb on - strand, within Dsui_2128at 2259.078 kb on + strand, within Dsui_2128at 2259.091 kb on - strand, within Dsui_2128at 2259.132 kb on - strand, within Dsui_2128at 2259.202 kb on + strand, within Dsui_2128at 2259.302 kb on - strand, within Dsui_2128at 2259.473 kb on + strandat 2259.485 kb on + strandat 2259.506 kb on + strandat 2259.514 kb on - strandat 2259.565 kb on + strandat 2259.596 kb on + strandat 2259.625 kb on + strandat 2259.672 kb on + strandat 2259.685 kb on - strandat 2259.690 kb on + strandat 2259.804 kb on - strandat 2260.248 kb on - strandat 2260.270 kb on + strandat 2260.515 kb on + strandat 2260.523 kb on - strandat 2260.523 kb on - strandat 2260.633 kb on + strandat 2260.694 kb on - strand, within Dsui_2130at 2260.762 kb on + strandat 2260.777 kb on - strand, within Dsui_2130at 2260.787 kb on - strand, within Dsui_2130

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,255,847 - -0.0
2,255,990 - +1.0
2,256,090 - Dsui_2127 0.57 -0.6
2,256,123 - +1.0
2,256,128 - +1.0
2,256,128 - Dsui_2127 0.62 -2.2
2,256,172 + Dsui_2127 0.67 -0.0
2,256,440 + -0.6
2,256,440 + +1.0
2,256,448 - -1.0
2,256,448 - -0.6
2,256,491 + -1.0
2,256,499 - -0.0
2,256,571 + +1.0
2,256,626 - -1.0
2,256,651 + +1.0
2,256,745 + -1.0
2,256,762 + -2.2
2,256,770 - -1.0
2,256,827 - +1.0
2,256,910 + Dsui_2128 0.10 +1.0
2,256,986 + Dsui_2128 0.13 -2.2
2,257,181 - Dsui_2128 0.19 -0.0
2,257,276 + Dsui_2128 0.22 -0.0
2,257,304 + Dsui_2128 0.23 -0.6
2,257,322 - Dsui_2128 0.23 -2.0
2,257,457 - +1.0
2,257,469 + +1.0
2,257,581 + Dsui_2128 0.31 -0.2
2,257,589 - +1.0
2,257,689 + Dsui_2128 0.35 -1.7
2,257,840 - Dsui_2128 0.39 +1.0
2,257,944 + Dsui_2128 0.43 -1.8
2,258,089 + Dsui_2128 0.47 -2.0
2,258,446 - -0.6
2,258,462 + Dsui_2128 0.59 +1.0
2,258,586 + Dsui_2128 0.62 -0.0
2,258,648 + Dsui_2128 0.64 -2.0
2,258,687 + Dsui_2128 0.66 +1.0
2,258,841 + Dsui_2128 0.70 -3.4
2,258,878 - -0.0
2,258,906 - +1.0
2,258,947 + Dsui_2128 0.74 +2.0
2,258,970 - Dsui_2128 0.74 -2.2
2,258,984 + Dsui_2128 0.75 -1.3
2,259,055 - Dsui_2128 0.77 -0.6
2,259,078 + Dsui_2128 0.78 -1.0
2,259,091 - Dsui_2128 0.78 -1.0
2,259,132 - Dsui_2128 0.79 -0.6
2,259,202 + Dsui_2128 0.82 -2.8
2,259,302 - Dsui_2128 0.85 -1.0
2,259,473 + -0.0
2,259,485 + -1.0
2,259,506 + -1.0
2,259,514 - -2.0
2,259,565 + -2.3
2,259,596 + -2.3
2,259,625 + -1.3
2,259,672 + -2.0
2,259,685 - -0.6
2,259,690 + -0.9
2,259,804 - +1.0
2,260,248 - -0.6
2,260,270 + -0.0
2,260,515 + -1.0
2,260,523 - +1.0
2,260,523 - -0.0
2,260,633 + -0.6
2,260,694 - Dsui_2130 0.10 -0.3
2,260,762 + -0.0
2,260,777 - Dsui_2130 0.14 -0.6
2,260,787 - Dsui_2130 0.14 -2.3

Or see this region's nucleotide sequence