Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2126 and Dsui_2127 are separated by 67 nucleotides Dsui_2127 and Dsui_2128 are separated by 143 nucleotides Dsui_2128 and Dsui_2129 are separated by 84 nucleotides Dsui_2129 and Dsui_2130 are separated by 299 nucleotides
Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574
_2126
Dsui_2127: Dsui_2127 - flavodoxin reductase family protein, at 2,255,642 to 2,256,430
_2127
Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795
_2128
Dsui_2129: Dsui_2129 - bacterial nucleoid DNA-binding protein, at 2,259,880 to 2,260,164
_2129
Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713
_2130
Position (kb)
2256
2257
2258
2259
2260 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2255.847 kb on - strand at 2255.990 kb on - strand at 2256.090 kb on - strand, within Dsui_2127 at 2256.123 kb on - strand at 2256.128 kb on - strand at 2256.128 kb on - strand, within Dsui_2127 at 2256.172 kb on + strand, within Dsui_2127 at 2256.440 kb on + strand at 2256.440 kb on + strand at 2256.448 kb on - strand at 2256.448 kb on - strand at 2256.491 kb on + strand at 2256.499 kb on - strand at 2256.571 kb on + strand at 2256.626 kb on - strand at 2256.651 kb on + strand at 2256.745 kb on + strand at 2256.762 kb on + strand at 2256.770 kb on - strand at 2256.827 kb on - strand at 2256.910 kb on + strand, within Dsui_2128 at 2256.986 kb on + strand, within Dsui_2128 at 2257.181 kb on - strand, within Dsui_2128 at 2257.276 kb on + strand, within Dsui_2128 at 2257.304 kb on + strand, within Dsui_2128 at 2257.322 kb on - strand, within Dsui_2128 at 2257.457 kb on - strand at 2257.469 kb on + strand at 2257.581 kb on + strand, within Dsui_2128 at 2257.589 kb on - strand at 2257.689 kb on + strand, within Dsui_2128 at 2257.840 kb on - strand, within Dsui_2128 at 2257.944 kb on + strand, within Dsui_2128 at 2258.089 kb on + strand, within Dsui_2128 at 2258.446 kb on - strand at 2258.462 kb on + strand, within Dsui_2128 at 2258.586 kb on + strand, within Dsui_2128 at 2258.648 kb on + strand, within Dsui_2128 at 2258.687 kb on + strand, within Dsui_2128 at 2258.841 kb on + strand, within Dsui_2128 at 2258.878 kb on - strand at 2258.906 kb on - strand at 2258.947 kb on + strand, within Dsui_2128 at 2258.970 kb on - strand, within Dsui_2128 at 2258.984 kb on + strand, within Dsui_2128 at 2259.055 kb on - strand, within Dsui_2128 at 2259.078 kb on + strand, within Dsui_2128 at 2259.091 kb on - strand, within Dsui_2128 at 2259.132 kb on - strand, within Dsui_2128 at 2259.202 kb on + strand, within Dsui_2128 at 2259.302 kb on - strand, within Dsui_2128 at 2259.473 kb on + strand at 2259.485 kb on + strand at 2259.506 kb on + strand at 2259.514 kb on - strand at 2259.565 kb on + strand at 2259.596 kb on + strand at 2259.625 kb on + strand at 2259.672 kb on + strand at 2259.685 kb on - strand at 2259.690 kb on + strand at 2259.804 kb on - strand at 2260.248 kb on - strand at 2260.270 kb on + strand at 2260.515 kb on + strand at 2260.523 kb on - strand at 2260.523 kb on - strand at 2260.633 kb on + strand at 2260.694 kb on - strand, within Dsui_2130 at 2260.762 kb on + strand at 2260.777 kb on - strand, within Dsui_2130 at 2260.787 kb on - strand, within Dsui_2130
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,255,847 - -0.0 2,255,990 - +1.0 2,256,090 - Dsui_2127 0.57 -0.6 2,256,123 - +1.0 2,256,128 - +1.0 2,256,128 - Dsui_2127 0.62 -2.2 2,256,172 + Dsui_2127 0.67 -0.0 2,256,440 + -0.6 2,256,440 + +1.0 2,256,448 - -1.0 2,256,448 - -0.6 2,256,491 + -1.0 2,256,499 - -0.0 2,256,571 + +1.0 2,256,626 - -1.0 2,256,651 + +1.0 2,256,745 + -1.0 2,256,762 + -2.2 2,256,770 - -1.0 2,256,827 - +1.0 2,256,910 + Dsui_2128 0.10 +1.0 2,256,986 + Dsui_2128 0.13 -2.2 2,257,181 - Dsui_2128 0.19 -0.0 2,257,276 + Dsui_2128 0.22 -0.0 2,257,304 + Dsui_2128 0.23 -0.6 2,257,322 - Dsui_2128 0.23 -2.0 2,257,457 - +1.0 2,257,469 + +1.0 2,257,581 + Dsui_2128 0.31 -0.2 2,257,589 - +1.0 2,257,689 + Dsui_2128 0.35 -1.7 2,257,840 - Dsui_2128 0.39 +1.0 2,257,944 + Dsui_2128 0.43 -1.8 2,258,089 + Dsui_2128 0.47 -2.0 2,258,446 - -0.6 2,258,462 + Dsui_2128 0.59 +1.0 2,258,586 + Dsui_2128 0.62 -0.0 2,258,648 + Dsui_2128 0.64 -2.0 2,258,687 + Dsui_2128 0.66 +1.0 2,258,841 + Dsui_2128 0.70 -3.4 2,258,878 - -0.0 2,258,906 - +1.0 2,258,947 + Dsui_2128 0.74 +2.0 2,258,970 - Dsui_2128 0.74 -2.2 2,258,984 + Dsui_2128 0.75 -1.3 2,259,055 - Dsui_2128 0.77 -0.6 2,259,078 + Dsui_2128 0.78 -1.0 2,259,091 - Dsui_2128 0.78 -1.0 2,259,132 - Dsui_2128 0.79 -0.6 2,259,202 + Dsui_2128 0.82 -2.8 2,259,302 - Dsui_2128 0.85 -1.0 2,259,473 + -0.0 2,259,485 + -1.0 2,259,506 + -1.0 2,259,514 - -2.0 2,259,565 + -2.3 2,259,596 + -2.3 2,259,625 + -1.3 2,259,672 + -2.0 2,259,685 - -0.6 2,259,690 + -0.9 2,259,804 - +1.0 2,260,248 - -0.6 2,260,270 + -0.0 2,260,515 + -1.0 2,260,523 - +1.0 2,260,523 - -0.0 2,260,633 + -0.6 2,260,694 - Dsui_2130 0.10 -0.3 2,260,762 + -0.0 2,260,777 - Dsui_2130 0.14 -0.6 2,260,787 - Dsui_2130 0.14 -2.3
Or see this region's nucleotide sequence