Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2120 and Dsui_2121 are separated by 35 nucleotides Dsui_2121 and Dsui_2122 overlap by 4 nucleotides Dsui_2122 and Dsui_2123 are separated by 135 nucleotides
Dsui_2120: Dsui_2120 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,246,028 to 2,246,882
_2120
Dsui_2121: Dsui_2121 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,246,918 to 2,247,727
_2121
Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770
_2122
Dsui_2123: Dsui_2123 - EAL domain-containing protein, at 2,248,906 to 2,249,853
_2123
Position (kb)
2247
2248
2249 Strain fitness (log2 ratio)
-2
-1
0
1 at 2246.767 kb on + strand at 2246.822 kb on - strand at 2246.873 kb on - strand at 2246.905 kb on - strand at 2247.241 kb on + strand at 2247.266 kb on - strand, within Dsui_2121 at 2247.421 kb on - strand, within Dsui_2121 at 2247.633 kb on - strand at 2247.707 kb on + strand at 2247.715 kb on - strand at 2247.755 kb on + strand at 2247.828 kb on + strand at 2247.888 kb on + strand, within Dsui_2122 at 2247.920 kb on - strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.938 kb on - strand at 2248.018 kb on + strand at 2248.033 kb on + strand at 2248.040 kb on + strand, within Dsui_2122 at 2248.130 kb on + strand, within Dsui_2122 at 2248.138 kb on - strand, within Dsui_2122 at 2248.166 kb on - strand at 2248.201 kb on + strand, within Dsui_2122 at 2248.209 kb on - strand, within Dsui_2122 at 2248.219 kb on - strand at 2248.235 kb on + strand, within Dsui_2122 at 2248.278 kb on - strand at 2248.303 kb on - strand at 2248.412 kb on - strand, within Dsui_2122 at 2248.483 kb on - strand at 2248.508 kb on + strand, within Dsui_2122 at 2248.651 kb on - strand at 2248.670 kb on - strand at 2249.022 kb on + strand at 2249.159 kb on - strand at 2249.245 kb on + strand at 2249.258 kb on - strand, within Dsui_2123 at 2249.351 kb on + strand at 2249.507 kb on - strand, within Dsui_2123 at 2249.601 kb on - strand at 2249.664 kb on - strand, within Dsui_2123
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,246,767 + +1.0 2,246,822 - -0.0 2,246,873 - -0.6 2,246,905 - -1.3 2,247,241 + +1.0 2,247,266 - Dsui_2121 0.43 +1.0 2,247,421 - Dsui_2121 0.62 +1.0 2,247,633 - +1.0 2,247,707 + +1.0 2,247,715 - +1.0 2,247,755 + +1.0 2,247,828 + +1.0 2,247,888 + Dsui_2122 0.16 -0.6 2,247,920 - Dsui_2122 0.19 -0.0 2,247,930 + Dsui_2122 0.20 -1.0 2,247,930 + Dsui_2122 0.20 -1.0 2,247,938 - -0.6 2,248,018 + +1.0 2,248,033 + +1.0 2,248,040 + Dsui_2122 0.30 -2.5 2,248,130 + Dsui_2122 0.39 -0.0 2,248,138 - Dsui_2122 0.40 +1.0 2,248,166 - +1.0 2,248,201 + Dsui_2122 0.46 -1.0 2,248,209 - Dsui_2122 0.46 -1.0 2,248,219 - -0.0 2,248,235 + Dsui_2122 0.49 -2.3 2,248,278 - -0.0 2,248,303 - +1.0 2,248,412 - Dsui_2122 0.66 -0.0 2,248,483 - +1.0 2,248,508 + Dsui_2122 0.75 -0.0 2,248,651 - -0.6 2,248,670 - +1.0 2,249,022 + +1.0 2,249,159 - +1.0 2,249,245 + +1.0 2,249,258 - Dsui_2123 0.37 -1.0 2,249,351 + -0.0 2,249,507 - Dsui_2123 0.63 -0.6 2,249,601 - +1.0 2,249,664 - Dsui_2123 0.80 -0.0
Or see this region's nucleotide sequence