Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1849 and Dsui_1850 are separated by 3 nucleotides Dsui_1850 and Dsui_1851 are separated by 319 nucleotides Dsui_1851 and Dsui_1852 are separated by 3 nucleotides Dsui_1852 and Dsui_1853 are separated by 215 nucleotides
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Dsui_1852: Dsui_1852 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,946,841 to 1,947,530
_1852
Dsui_1853: Dsui_1853 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,947,746 to 1,948,312
_1853
Position (kb)
1945
1946
1947 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850 at 1945.291 kb on - strand at 1945.529 kb on + strand at 1945.633 kb on + strand at 1945.640 kb on + strand at 1945.648 kb on - strand at 1945.745 kb on + strand at 1945.802 kb on + strand at 1945.922 kb on - strand, within Dsui_1851 at 1945.955 kb on + strand at 1946.037 kb on + strand at 1946.077 kb on + strand at 1946.095 kb on - strand, within Dsui_1851 at 1946.267 kb on - strand, within Dsui_1851 at 1946.316 kb on + strand at 1946.317 kb on + strand, within Dsui_1851 at 1946.340 kb on - strand, within Dsui_1851 at 1946.527 kb on + strand, within Dsui_1851 at 1946.575 kb on + strand, within Dsui_1851 at 1946.839 kb on + strand at 1946.917 kb on - strand at 1946.996 kb on + strand at 1947.005 kb on + strand, within Dsui_1852 at 1947.030 kb on + strand, within Dsui_1852 at 1947.188 kb on - strand, within Dsui_1852 at 1947.262 kb on - strand, within Dsui_1852 at 1947.561 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.644 kb on - strand at 1947.697 kb on + strand at 1947.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,944,648 - Dsui_1849 0.88 -1.6 1,944,716 - +0.8 1,944,793 - Dsui_1850 0.22 -0.2 1,944,902 - Dsui_1850 0.50 -0.2 1,944,925 - Dsui_1850 0.56 -0.2 1,944,941 + Dsui_1850 0.60 -1.6 1,944,945 - Dsui_1850 0.61 -0.2 1,944,964 + +0.8 1,944,964 + Dsui_1850 0.66 -1.2 1,944,972 - Dsui_1850 0.68 -0.1 1,945,291 - -1.2 1,945,529 + +0.8 1,945,633 + +0.8 1,945,640 + -0.2 1,945,648 - +0.8 1,945,745 + -1.2 1,945,802 + -0.2 1,945,922 - Dsui_1851 0.36 -2.0 1,945,955 + +0.8 1,946,037 + -0.8 1,946,077 + -1.2 1,946,095 - Dsui_1851 0.48 -0.2 1,946,267 - Dsui_1851 0.60 -1.2 1,946,316 + +0.8 1,946,317 + Dsui_1851 0.63 -0.8 1,946,340 - Dsui_1851 0.65 +0.8 1,946,527 + Dsui_1851 0.78 -0.8 1,946,575 + Dsui_1851 0.82 -1.2 1,946,839 + -0.2 1,946,917 - +0.8 1,946,996 + -0.2 1,947,005 + Dsui_1852 0.24 -3.3 1,947,030 + Dsui_1852 0.27 -2.0 1,947,188 - Dsui_1852 0.50 -0.2 1,947,262 - Dsui_1852 0.61 -0.8 1,947,561 + -0.2 1,947,617 + -0.2 1,947,617 + +0.8 1,947,617 + +0.8 1,947,625 - -0.2 1,947,625 - -0.2 1,947,625 - -0.8 1,947,625 - +0.8 1,947,644 - +0.8 1,947,697 + +0.8 1,947,783 + -1.8
Or see this region's nucleotide sequence