Strain Fitness in Dechlorosoma suillum PS around Dsui_1282

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1281 and Dsui_1282 are separated by 24 nucleotidesDsui_1282 and Dsui_1283 are separated by 23 nucleotidesDsui_1283 and Dsui_1284 overlap by 14 nucleotides Dsui_1281: Dsui_1281 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,331 to 1,343,867 _1281 Dsui_1282: Dsui_1282 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,892 to 1,344,338 _1282 Dsui_1283: Dsui_1283 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,344,362 to 1,344,838 _1283 Dsui_1284: Dsui_1284 - hypothetical protein, at 1,344,825 to 1,345,418 _1284 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1at 1342.892 kb on - strandat 1342.894 kb on + strandat 1342.902 kb on - strandat 1342.948 kb on - strandat 1343.007 kb on - strandat 1343.050 kb on + strandat 1343.050 kb on + strandat 1343.050 kb on + strandat 1343.050 kb on + strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.058 kb on - strandat 1343.068 kb on - strandat 1343.112 kb on - strandat 1343.152 kb on - strandat 1343.223 kb on - strandat 1343.308 kb on + strandat 1343.314 kb on + strandat 1343.344 kb on + strandat 1343.357 kb on - strandat 1343.359 kb on + strandat 1343.359 kb on + strandat 1343.359 kb on + strandat 1343.359 kb on + strandat 1343.366 kb on - strandat 1343.367 kb on - strandat 1343.367 kb on - strandat 1343.367 kb on - strandat 1343.367 kb on - strandat 1343.418 kb on + strand, within Dsui_1281at 1343.471 kb on - strand, within Dsui_1281at 1343.481 kb on - strand, within Dsui_1281at 1343.507 kb on + strand, within Dsui_1281at 1343.507 kb on + strand, within Dsui_1281at 1343.541 kb on + strand, within Dsui_1281at 1343.541 kb on + strand, within Dsui_1281at 1343.559 kb on - strand, within Dsui_1281at 1343.571 kb on - strand, within Dsui_1281at 1343.593 kb on - strand, within Dsui_1281at 1343.801 kb on - strand, within Dsui_1281at 1343.809 kb on + strand, within Dsui_1281at 1343.852 kb on + strandat 1343.852 kb on + strandat 1343.910 kb on + strandat 1343.911 kb on + strandat 1343.911 kb on + strandat 1343.919 kb on - strandat 1343.919 kb on - strandat 1343.919 kb on - strandat 1343.921 kb on + strandat 1343.921 kb on + strandat 1343.928 kb on - strandat 1343.929 kb on - strandat 1343.983 kb on - strand, within Dsui_1282at 1344.088 kb on - strand, within Dsui_1282at 1344.088 kb on - strand, within Dsui_1282at 1344.127 kb on - strand, within Dsui_1282at 1344.152 kb on - strand, within Dsui_1282at 1344.199 kb on - strand, within Dsui_1282at 1344.201 kb on + strand, within Dsui_1282at 1344.258 kb on - strand, within Dsui_1282at 1344.283 kb on - strand, within Dsui_1282at 1344.285 kb on - strand, within Dsui_1282at 1344.285 kb on - strand, within Dsui_1282at 1344.402 kb on + strandat 1344.435 kb on - strand, within Dsui_1283at 1344.696 kb on + strand, within Dsui_1283at 1344.696 kb on + strand, within Dsui_1283at 1344.731 kb on + strand, within Dsui_1283at 1344.739 kb on - strand, within Dsui_1283at 1344.739 kb on - strand, within Dsui_1283at 1344.775 kb on - strand, within Dsui_1283at 1344.779 kb on + strand, within Dsui_1283at 1344.792 kb on - strandat 1344.820 kb on - strandat 1344.856 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1345.002 kb on + strand, within Dsui_1284at 1345.003 kb on + strand, within Dsui_1284at 1345.010 kb on - strand, within Dsui_1284at 1345.011 kb on - strand, within Dsui_1284at 1345.054 kb on + strand, within Dsui_1284at 1345.065 kb on + strand, within Dsui_1284at 1345.065 kb on + strand, within Dsui_1284at 1345.101 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.109 kb on - strand, within Dsui_1284at 1345.109 kb on - strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.144 kb on - strand, within Dsui_1284at 1345.326 kb on + strand, within Dsui_1284at 1345.330 kb on - strand, within Dsui_1284

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,342,892 - -2.2
1,342,894 + -0.4
1,342,902 - -2.7
1,342,948 - -2.5
1,343,007 - -0.9
1,343,050 + -0.5
1,343,050 + -0.3
1,343,050 + -0.5
1,343,050 + -0.2
1,343,058 - -0.9
1,343,058 - +0.6
1,343,058 - +0.6
1,343,058 - +0.6
1,343,058 - -1.4
1,343,058 - +0.6
1,343,058 - +0.6
1,343,068 - +0.6
1,343,112 - -0.9
1,343,152 - -0.4
1,343,223 - +0.6
1,343,308 + +0.0
1,343,314 + +0.6
1,343,344 + +0.4
1,343,357 - -1.4
1,343,359 + +0.3
1,343,359 + +0.2
1,343,359 + +0.2
1,343,359 + +0.4
1,343,366 - -0.9
1,343,367 - +0.6
1,343,367 - -1.9
1,343,367 - +0.6
1,343,367 - +0.6
1,343,418 + Dsui_1281 0.16 +0.3
1,343,471 - Dsui_1281 0.26 +0.4
1,343,481 - Dsui_1281 0.28 +0.6
1,343,507 + Dsui_1281 0.33 +0.3
1,343,507 + Dsui_1281 0.33 +0.3
1,343,541 + Dsui_1281 0.39 +0.3
1,343,541 + Dsui_1281 0.39 -0.1
1,343,559 - Dsui_1281 0.42 -0.9
1,343,571 - Dsui_1281 0.45 +0.6
1,343,593 - Dsui_1281 0.49 +0.6
1,343,801 - Dsui_1281 0.88 +0.2
1,343,809 + Dsui_1281 0.89 -0.3
1,343,852 + +0.1
1,343,852 + -0.3
1,343,910 + +0.7
1,343,911 + +0.8
1,343,911 + +0.6
1,343,919 - -0.4
1,343,919 - +0.6
1,343,919 - -0.4
1,343,921 + +0.7
1,343,921 + +0.5
1,343,928 - +0.6
1,343,929 - -0.4
1,343,983 - Dsui_1282 0.20 -0.4
1,344,088 - Dsui_1282 0.44 +0.6
1,344,088 - Dsui_1282 0.44 -0.9
1,344,127 - Dsui_1282 0.53 -0.4
1,344,152 - Dsui_1282 0.58 +0.6
1,344,199 - Dsui_1282 0.69 +0.6
1,344,201 + Dsui_1282 0.69 -0.7
1,344,258 - Dsui_1282 0.82 +0.6
1,344,283 - Dsui_1282 0.87 -1.4
1,344,285 - Dsui_1282 0.88 +0.6
1,344,285 - Dsui_1282 0.88 +0.6
1,344,402 + +0.8
1,344,435 - Dsui_1283 0.15 +0.6
1,344,696 + Dsui_1283 0.70 +0.3
1,344,696 + Dsui_1283 0.70 +0.5
1,344,731 + Dsui_1283 0.77 +0.5
1,344,739 - Dsui_1283 0.79 +0.6
1,344,739 - Dsui_1283 0.79 -1.3
1,344,775 - Dsui_1283 0.87 +0.6
1,344,779 + Dsui_1283 0.87 +0.7
1,344,792 - +0.6
1,344,820 - -1.4
1,344,856 + +0.6
1,344,883 + +0.7
1,344,883 + +0.9
1,344,883 + +0.5
1,344,883 + +0.5
1,344,883 + +0.4
1,345,002 + Dsui_1284 0.30 +0.5
1,345,003 + Dsui_1284 0.30 +0.7
1,345,010 - Dsui_1284 0.31 -2.4
1,345,011 - Dsui_1284 0.31 +0.6
1,345,054 + Dsui_1284 0.39 +0.7
1,345,065 + Dsui_1284 0.40 +0.6
1,345,065 + Dsui_1284 0.40 +0.9
1,345,101 + Dsui_1284 0.46 +0.1
1,345,106 + Dsui_1284 0.47 +0.8
1,345,106 + Dsui_1284 0.47 +0.5
1,345,106 + Dsui_1284 0.47 +0.3
1,345,109 - Dsui_1284 0.48 -0.4
1,345,109 - Dsui_1284 0.48 -0.4
1,345,111 + Dsui_1284 0.48 +0.3
1,345,111 + Dsui_1284 0.48 +0.3
1,345,111 + Dsui_1284 0.48 +0.8
1,345,119 - Dsui_1284 0.49 +0.6
1,345,119 - Dsui_1284 0.49 -0.4
1,345,119 - Dsui_1284 0.49 -1.9
1,345,119 - Dsui_1284 0.49 -1.4
1,345,119 - Dsui_1284 0.49 -0.4
1,345,119 - Dsui_1284 0.49 -1.4
1,345,119 - Dsui_1284 0.49 +0.6
1,345,121 + Dsui_1284 0.50 +0.6
1,345,121 + Dsui_1284 0.50 +0.6
1,345,121 + Dsui_1284 0.50 +1.0
1,345,129 - Dsui_1284 0.51 +0.6
1,345,129 - Dsui_1284 0.51 -0.9
1,345,129 - Dsui_1284 0.51 -2.2
1,345,129 - Dsui_1284 0.51 -1.4
1,345,129 - Dsui_1284 0.51 -2.2
1,345,129 - Dsui_1284 0.51 -0.9
1,345,144 - Dsui_1284 0.54 +0.6
1,345,326 + Dsui_1284 0.84 +0.7
1,345,330 - Dsui_1284 0.85 -1.4

Or see this region's nucleotide sequence