Strain Fitness in Dechlorosoma suillum PS around Dsui_0300

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0298 and Dsui_0299 are separated by 84 nucleotidesDsui_0299 and Dsui_0300 are separated by 4 nucleotidesDsui_0300 and Dsui_0301 are separated by 31 nucleotidesDsui_0301 and Dsui_0302 are separated by 160 nucleotides Dsui_0298: Dsui_0298 - Kef-type K+ ransport system, predicted NAD-binding component, at 299,543 to 300,421 _0298 Dsui_0299: Dsui_0299 - acetyltransferase, at 300,506 to 300,991 _0299 Dsui_0300: Dsui_0300 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 300,996 to 302,621 _0300 Dsui_0301: Dsui_0301 - histidine kinase, at 302,653 to 303,342 _0301 Dsui_0302: Dsui_0302 - UbiD family decarboxylase, at 303,503 to 304,978 _0302 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 299.999 kb on - strand, within Dsui_0298at 300.001 kb on + strand, within Dsui_0298at 300.001 kb on + strand, within Dsui_0298at 300.027 kb on - strand, within Dsui_0298at 300.098 kb on - strand, within Dsui_0298at 300.149 kb on + strand, within Dsui_0298at 300.149 kb on + strandat 300.152 kb on - strand, within Dsui_0298at 300.174 kb on + strandat 300.182 kb on - strand, within Dsui_0298at 300.237 kb on - strand, within Dsui_0298at 300.243 kb on - strand, within Dsui_0298at 300.272 kb on + strand, within Dsui_0298at 300.525 kb on + strandat 300.533 kb on - strandat 300.564 kb on - strand, within Dsui_0299at 300.616 kb on + strandat 300.616 kb on + strandat 300.663 kb on + strandat 300.671 kb on - strand, within Dsui_0299at 300.671 kb on - strand, within Dsui_0299at 300.677 kb on + strandat 300.734 kb on + strand, within Dsui_0299at 300.800 kb on - strand, within Dsui_0299at 300.812 kb on - strand, within Dsui_0299at 300.933 kb on - strand, within Dsui_0299at 300.961 kb on + strandat 301.046 kb on - strandat 301.124 kb on + strandat 301.132 kb on - strandat 301.132 kb on - strandat 301.241 kb on + strand, within Dsui_0300at 301.285 kb on + strand, within Dsui_0300at 301.303 kb on - strand, within Dsui_0300at 301.353 kb on - strand, within Dsui_0300at 301.374 kb on + strand, within Dsui_0300at 301.387 kb on + strand, within Dsui_0300at 301.548 kb on + strand, within Dsui_0300at 301.576 kb on + strand, within Dsui_0300at 301.582 kb on + strand, within Dsui_0300at 301.590 kb on - strand, within Dsui_0300at 301.590 kb on - strand, within Dsui_0300at 301.597 kb on + strand, within Dsui_0300at 301.616 kb on + strand, within Dsui_0300at 301.698 kb on + strand, within Dsui_0300at 301.706 kb on - strand, within Dsui_0300at 301.787 kb on - strand, within Dsui_0300at 301.896 kb on + strand, within Dsui_0300at 301.903 kb on + strand, within Dsui_0300at 301.923 kb on - strand, within Dsui_0300at 301.935 kb on + strand, within Dsui_0300at 301.956 kb on - strand, within Dsui_0300at 301.987 kb on - strand, within Dsui_0300at 302.002 kb on - strand, within Dsui_0300at 302.079 kb on + strand, within Dsui_0300at 302.124 kb on + strand, within Dsui_0300at 302.127 kb on - strand, within Dsui_0300at 302.169 kb on + strand, within Dsui_0300at 302.221 kb on - strand, within Dsui_0300at 302.271 kb on - strand, within Dsui_0300at 302.271 kb on - strand, within Dsui_0300at 302.297 kb on - strand, within Dsui_0300at 302.307 kb on - strand, within Dsui_0300at 302.512 kb on - strandat 302.516 kb on + strandat 302.524 kb on - strandat 302.538 kb on + strandat 302.649 kb on - strandat 302.651 kb on + strandat 302.662 kb on + strandat 302.882 kb on - strand, within Dsui_0301at 302.924 kb on + strandat 302.987 kb on + strand, within Dsui_0301at 303.007 kb on + strand, within Dsui_0301at 303.061 kb on - strand, within Dsui_0301at 303.315 kb on + strandat 303.323 kb on - strandat 303.433 kb on - strandat 303.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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299,999 - Dsui_0298 0.52 -0.1
300,001 + Dsui_0298 0.52 -0.3
300,001 + Dsui_0298 0.52 -0.3
300,027 - Dsui_0298 0.55 -2.3
300,098 - Dsui_0298 0.63 -1.1
300,149 + Dsui_0298 0.69 -1.3
300,149 + +0.7
300,152 - Dsui_0298 0.69 -1.2
300,174 + +0.7
300,182 - Dsui_0298 0.73 -0.2
300,237 - Dsui_0298 0.79 -0.6
300,243 - Dsui_0298 0.80 -1.6
300,272 + Dsui_0298 0.83 -0.3
300,525 + -1.3
300,533 - -1.0
300,564 - Dsui_0299 0.12 -0.3
300,616 + +0.7
300,616 + -0.3
300,663 + -0.3
300,671 - Dsui_0299 0.34 -0.7
300,671 - Dsui_0299 0.34 +0.3
300,677 + +0.7
300,734 + Dsui_0299 0.47 -0.9
300,800 - Dsui_0299 0.60 +0.7
300,812 - Dsui_0299 0.63 -0.3
300,933 - Dsui_0299 0.88 -0.6
300,961 + +0.7
301,046 - +0.1
301,124 + +0.7
301,132 - +0.0
301,132 - -0.6
301,241 + Dsui_0300 0.15 -1.3
301,285 + Dsui_0300 0.18 -1.6
301,303 - Dsui_0300 0.19 -0.3
301,353 - Dsui_0300 0.22 -0.5
301,374 + Dsui_0300 0.23 -2.6
301,387 + Dsui_0300 0.24 -2.3
301,548 + Dsui_0300 0.34 -1.9
301,576 + Dsui_0300 0.36 -1.9
301,582 + Dsui_0300 0.36 -2.1
301,590 - Dsui_0300 0.37 -0.5
301,590 - Dsui_0300 0.37 -0.2
301,597 + Dsui_0300 0.37 +0.7
301,616 + Dsui_0300 0.38 +0.7
301,698 + Dsui_0300 0.43 +0.7
301,706 - Dsui_0300 0.44 -0.5
301,787 - Dsui_0300 0.49 -0.4
301,896 + Dsui_0300 0.55 -0.9
301,903 + Dsui_0300 0.56 -2.3
301,923 - Dsui_0300 0.57 -0.5
301,935 + Dsui_0300 0.58 -1.6
301,956 - Dsui_0300 0.59 -0.5
301,987 - Dsui_0300 0.61 +0.1
302,002 - Dsui_0300 0.62 -0.3
302,079 + Dsui_0300 0.67 -0.3
302,124 + Dsui_0300 0.69 -1.9
302,127 - Dsui_0300 0.70 -0.2
302,169 + Dsui_0300 0.72 -0.9
302,221 - Dsui_0300 0.75 -0.6
302,271 - Dsui_0300 0.78 -0.6
302,271 - Dsui_0300 0.78 -1.0
302,297 - Dsui_0300 0.80 -0.5
302,307 - Dsui_0300 0.81 -0.2
302,512 - -0.6
302,516 + +0.7
302,524 - -0.2
302,538 + +0.7
302,649 - -1.0
302,651 + -0.3
302,662 + +0.7
302,882 - Dsui_0301 0.33 -0.2
302,924 + +0.7
302,987 + Dsui_0301 0.48 +0.7
303,007 + Dsui_0301 0.51 -1.6
303,061 - Dsui_0301 0.59 -0.5
303,315 + +0.0
303,323 - -0.4
303,433 - -1.8
303,516 - -0.3

Or see this region's nucleotide sequence