Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33130 and AZOBR_RS33135 are separated by 100 nucleotides AZOBR_RS33135 and AZOBR_RS33140 are separated by 100 nucleotides AZOBR_RS33140 and AZOBR_RS33145 overlap by 4 nucleotides
AZOBR_RS33130: AZOBR_RS33130 - hypothetical protein, at 119,242 to 120,483
_RS33130
AZOBR_RS33135: AZOBR_RS33135 - hypothetical protein, at 120,584 to 121,303
_RS33135
AZOBR_RS33140: AZOBR_RS33140 - hypothetical protein, at 121,404 to 122,414
_RS33140
AZOBR_RS33145: AZOBR_RS33145 - hypothetical protein, at 122,411 to 124,936
_RS33145
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 120.409 kb on + strand at 120.410 kb on - strand at 120.783 kb on + strand, within AZOBR_RS33135 at 120.784 kb on - strand, within AZOBR_RS33135 at 120.786 kb on + strand, within AZOBR_RS33135 at 120.786 kb on + strand, within AZOBR_RS33135 at 120.787 kb on - strand, within AZOBR_RS33135 at 120.787 kb on - strand, within AZOBR_RS33135 at 120.894 kb on + strand, within AZOBR_RS33135 at 120.895 kb on - strand, within AZOBR_RS33135 at 120.996 kb on + strand, within AZOBR_RS33135 at 120.997 kb on - strand, within AZOBR_RS33135 at 120.997 kb on - strand, within AZOBR_RS33135 at 121.510 kb on - strand, within AZOBR_RS33140 at 121.510 kb on - strand, within AZOBR_RS33140 at 121.533 kb on + strand, within AZOBR_RS33140 at 121.534 kb on - strand, within AZOBR_RS33140 at 122.002 kb on - strand, within AZOBR_RS33140 at 122.396 kb on + strand at 122.396 kb on + strand at 122.448 kb on + strand at 122.625 kb on + strand at 122.947 kb on - strand, within AZOBR_RS33145 at 123.216 kb on + strand, within AZOBR_RS33145 at 123.216 kb on + strand, within AZOBR_RS33145 at 123.216 kb on + strand, within AZOBR_RS33145 at 123.367 kb on - strand, within AZOBR_RS33145 at 123.396 kb on + strand, within AZOBR_RS33145 at 123.396 kb on + strand, within AZOBR_RS33145 at 123.397 kb on - strand, within AZOBR_RS33145
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 120,409 + -0.4 120,410 - +0.4 120,783 + AZOBR_RS33135 0.28 -1.3 120,784 - AZOBR_RS33135 0.28 +2.4 120,786 + AZOBR_RS33135 0.28 -1.0 120,786 + AZOBR_RS33135 0.28 -1.3 120,787 - AZOBR_RS33135 0.28 +0.0 120,787 - AZOBR_RS33135 0.28 -2.8 120,894 + AZOBR_RS33135 0.43 +0.9 120,895 - AZOBR_RS33135 0.43 +0.5 120,996 + AZOBR_RS33135 0.57 -1.0 120,997 - AZOBR_RS33135 0.57 +0.1 120,997 - AZOBR_RS33135 0.57 -1.3 121,510 - AZOBR_RS33140 0.10 +0.1 121,510 - AZOBR_RS33140 0.10 -1.0 121,533 + AZOBR_RS33140 0.13 +1.1 121,534 - AZOBR_RS33140 0.13 -1.1 122,002 - AZOBR_RS33140 0.59 -1.5 122,396 + -0.5 122,396 + -1.1 122,448 + -1.7 122,625 + +0.5 122,947 - AZOBR_RS33145 0.21 -1.7 123,216 + AZOBR_RS33145 0.32 +0.8 123,216 + AZOBR_RS33145 0.32 +0.6 123,216 + AZOBR_RS33145 0.32 +0.2 123,367 - AZOBR_RS33145 0.38 -1.2 123,396 + AZOBR_RS33145 0.39 +1.5 123,396 + AZOBR_RS33145 0.39 +0.1 123,397 - AZOBR_RS33145 0.39 +0.2
Or see this region's nucleotide sequence