Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32325

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32320 and AZOBR_RS32325 are separated by 257 nucleotidesAZOBR_RS32325 and AZOBR_RS32335 are separated by 995 nucleotides AZOBR_RS32320: AZOBR_RS32320 - LacI family transcriptional regulator, at 617,826 to 618,818 _RS32320 AZOBR_RS32325: AZOBR_RS32325 - Fructose PTS system (E-I, HPr, and E-IIA components) (from data), at 619,076 to 621,616 _RS32325 AZOBR_RS32335: AZOBR_RS32335 - fructose-specific PTS system (fructose 1-phosphate forming), EII-B'BC components (FruA) (from data), at 622,612 to 624,354 _RS32335 Position (kb) 619 620 621 622Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 618.505 kb on + strand, within AZOBR_RS32320at 618.505 kb on + strand, within AZOBR_RS32320at 618.506 kb on - strand, within AZOBR_RS32320at 618.506 kb on - strand, within AZOBR_RS32320at 618.506 kb on - strand, within AZOBR_RS32320at 618.506 kb on - strand, within AZOBR_RS32320at 618.506 kb on - strand, within AZOBR_RS32320at 620.846 kb on + strand, within AZOBR_RS32325at 620.846 kb on + strand, within AZOBR_RS32325at 620.847 kb on - strand, within AZOBR_RS32325at 620.847 kb on - strand, within AZOBR_RS32325at 621.039 kb on - strand, within AZOBR_RS32325at 621.282 kb on - strand, within AZOBR_RS32325at 621.282 kb on - strand, within AZOBR_RS32325at 622.083 kb on - strandat 622.083 kb on - strandat 622.083 kb on - strandat 622.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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618,505 + AZOBR_RS32320 0.68 -1.7
618,505 + AZOBR_RS32320 0.68 +1.1
618,506 - AZOBR_RS32320 0.68 -4.1
618,506 - AZOBR_RS32320 0.68 -1.5
618,506 - AZOBR_RS32320 0.68 -3.2
618,506 - AZOBR_RS32320 0.68 +2.4
618,506 - AZOBR_RS32320 0.68 -4.9
620,846 + AZOBR_RS32325 0.70 -2.3
620,846 + AZOBR_RS32325 0.70 +1.4
620,847 - AZOBR_RS32325 0.70 -1.0
620,847 - AZOBR_RS32325 0.70 -0.9
621,039 - AZOBR_RS32325 0.77 -0.4
621,282 - AZOBR_RS32325 0.87 -0.1
621,282 - AZOBR_RS32325 0.87 -2.2
622,083 - -1.9
622,083 - -0.1
622,083 - +0.2
622,083 - -0.1

Or see this region's nucleotide sequence