Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31950 and AZOBR_RS31955 are separated by 340 nucleotides AZOBR_RS31955 and AZOBR_RS31960 overlap by 4 nucleotides AZOBR_RS31960 and AZOBR_RS31965 are separated by 192 nucleotides
AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656
_RS31950
AZOBR_RS31955: AZOBR_RS31955 - lipid kinase, at 535,997 to 536,881
_RS31955
AZOBR_RS31960: AZOBR_RS31960 - HAD family hydrolase, at 536,878 to 537,555
_RS31960
AZOBR_RS31965: AZOBR_RS31965 - membrane protein, at 537,748 to 538,887
_RS31965
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.553 kb on + strand, within AZOBR_RS31950 at 535.553 kb on + strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.593 kb on - strand at 535.593 kb on - strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.013 kb on - strand at 536.013 kb on - strand at 536.223 kb on + strand, within AZOBR_RS31955 at 536.224 kb on - strand, within AZOBR_RS31955 at 536.933 kb on + strand at 536.933 kb on + strand at 536.934 kb on - strand at 537.126 kb on - strand, within AZOBR_RS31960 at 537.494 kb on + strand at 537.495 kb on - strand at 537.495 kb on - strand at 537.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 535,553 + AZOBR_RS31950 0.85 +1.0 535,553 + AZOBR_RS31950 0.85 +1.2 535,554 - AZOBR_RS31950 0.85 +2.0 535,554 - AZOBR_RS31950 0.85 +0.6 535,554 - AZOBR_RS31950 0.85 -0.0 535,554 - AZOBR_RS31950 0.85 +0.4 535,593 - +0.3 535,593 - -0.7 536,012 + +0.5 536,012 + +1.1 536,012 + +2.4 536,013 - +0.2 536,013 - +0.5 536,223 + AZOBR_RS31955 0.26 +0.0 536,224 - AZOBR_RS31955 0.26 -1.3 536,933 + -1.9 536,933 + +0.4 536,934 - +0.1 537,126 - AZOBR_RS31960 0.37 +1.7 537,494 + -0.8 537,495 - -2.3 537,495 - +0.9 537,495 - +2.0
Or see this region's nucleotide sequence