Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides AZOBR_RS31415 and AZOBR_RS31420 are separated by 285 nucleotides AZOBR_RS31420 and AZOBR_RS31425 are separated by 209 nucleotides
AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506
_RS31410
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
AZOBR_RS31420: AZOBR_RS31420 - methylglyoxal synthase, at 416,669 to 417,103
_RS31420
AZOBR_RS31425: AZOBR_RS31425 - glucuronate isomerase, at 417,313 to 418,716
_RS31425
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.914 kb on + strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 415.010 kb on + strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.094 kb on + strand, within AZOBR_RS31410 at 415.109 kb on + strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.202 kb on + strand, within AZOBR_RS31410 at 415.203 kb on - strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.457 kb on + strand at 415.494 kb on - strand at 415.557 kb on - strand at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 416.178 kb on + strand, within AZOBR_RS31415 at 416.179 kb on - strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.507 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.610 kb on + strand at 416.619 kb on - strand at 416.981 kb on + strand, within AZOBR_RS31420 at 416.981 kb on + strand, within AZOBR_RS31420 at 416.982 kb on - strand, within AZOBR_RS31420 at 417.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 414,803 + AZOBR_RS31410 0.34 -1.0 414,803 + AZOBR_RS31410 0.34 +0.1 414,804 - AZOBR_RS31410 0.34 -0.4 414,804 - AZOBR_RS31410 0.34 +0.1 414,804 - AZOBR_RS31410 0.34 -0.7 414,914 + AZOBR_RS31410 0.44 -1.0 414,993 - AZOBR_RS31410 0.52 +0.6 414,993 - AZOBR_RS31410 0.52 -1.6 415,010 + AZOBR_RS31410 0.53 +0.5 415,011 - AZOBR_RS31410 0.53 -2.1 415,011 - AZOBR_RS31410 0.53 +0.6 415,011 - AZOBR_RS31410 0.53 -0.6 415,011 - AZOBR_RS31410 0.53 +0.3 415,094 + AZOBR_RS31410 0.61 -0.3 415,109 + AZOBR_RS31410 0.63 -0.4 415,110 - AZOBR_RS31410 0.63 -0.0 415,110 - AZOBR_RS31410 0.63 -0.4 415,157 + AZOBR_RS31410 0.67 +1.4 415,157 + AZOBR_RS31410 0.67 +1.4 415,157 + AZOBR_RS31410 0.67 +0.3 415,157 + AZOBR_RS31410 0.67 -0.2 415,158 - AZOBR_RS31410 0.67 +0.1 415,158 - AZOBR_RS31410 0.67 -0.6 415,158 - AZOBR_RS31410 0.67 -0.4 415,158 - AZOBR_RS31410 0.67 +0.2 415,182 - AZOBR_RS31410 0.69 +1.0 415,182 - AZOBR_RS31410 0.69 -3.2 415,202 + AZOBR_RS31410 0.71 -0.4 415,203 - AZOBR_RS31410 0.71 -0.5 415,304 + AZOBR_RS31410 0.81 -0.1 415,304 + AZOBR_RS31410 0.81 -2.0 415,305 - AZOBR_RS31410 0.81 -1.2 415,305 - AZOBR_RS31410 0.81 +0.4 415,305 - AZOBR_RS31410 0.81 -0.0 415,305 - AZOBR_RS31410 0.81 +1.5 415,305 - AZOBR_RS31410 0.81 -0.2 415,457 + -0.7 415,494 - +0.0 415,557 - -0.2 415,687 - AZOBR_RS31415 0.11 -1.1 415,687 - AZOBR_RS31415 0.11 -0.6 415,687 - AZOBR_RS31415 0.11 -0.3 415,687 - AZOBR_RS31415 0.11 -0.5 416,178 + AZOBR_RS31415 0.74 -0.5 416,179 - AZOBR_RS31415 0.74 -0.7 416,259 + AZOBR_RS31415 0.84 -0.9 416,259 + AZOBR_RS31415 0.84 -1.0 416,507 + -0.9 416,509 + -1.9 416,509 + -2.3 416,509 + -0.4 416,510 - -0.0 416,510 - -0.0 416,510 - -1.2 416,513 - +0.5 416,513 - -2.1 416,513 - +1.0 416,513 - -0.7 416,610 + +1.2 416,619 - -0.5 416,981 + AZOBR_RS31420 0.72 -0.8 416,981 + AZOBR_RS31420 0.72 -0.3 416,982 - AZOBR_RS31420 0.72 -1.2 417,204 - +2.4
Or see this region's nucleotide sequence