Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31075 and AZOBR_RS31080 are separated by 133 nucleotides AZOBR_RS31080 and AZOBR_RS31085 are separated by 57 nucleotides AZOBR_RS31085 and AZOBR_RS31090 are separated by 196 nucleotides AZOBR_RS31090 and AZOBR_RS31095 are separated by 3 nucleotides
AZOBR_RS31075: AZOBR_RS31075 - UTP--glucose-1-phosphate uridylyltransferase, at 337,229 to 338,098
_RS31075
AZOBR_RS31080: AZOBR_RS31080 - hypothetical protein, at 338,232 to 338,948
_RS31080
AZOBR_RS31085: AZOBR_RS31085 - hypothetical protein, at 339,006 to 339,752
_RS31085
AZOBR_RS31090: AZOBR_RS31090 - pseudouridine synthase, at 339,949 to 340,659
_RS31090
AZOBR_RS31095: AZOBR_RS31095 - hypothetical protein, at 340,663 to 341,670
_RS31095
Position (kb) 339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.281 kb on + strand at 338.282 kb on - strand at 338.282 kb on - strand at 338.340 kb on + strand, within AZOBR_RS31080 at 338.341 kb on - strand, within AZOBR_RS31080 at 338.378 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.384 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.675 kb on - strand, within AZOBR_RS31080 at 338.991 kb on + strand at 338.992 kb on - strand at 339.007 kb on + strand at 339.008 kb on - strand at 339.008 kb on - strand at 339.097 kb on + strand, within AZOBR_RS31085 at 339.097 kb on + strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.194 kb on - strand, within AZOBR_RS31085 at 339.515 kb on - strand, within AZOBR_RS31085 at 339.517 kb on + strand, within AZOBR_RS31085 at 340.243 kb on + strand, within AZOBR_RS31090 at 340.244 kb on - strand at 340.372 kb on + strand, within AZOBR_RS31090 at 340.372 kb on + strand, within AZOBR_RS31090 at 340.373 kb on - strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.493 kb on - strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.657 kb on + strand at 340.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 338,281 + +0.9 338,282 - +0.4 338,282 - -0.4 338,340 + AZOBR_RS31080 0.15 +2.3 338,341 - AZOBR_RS31080 0.15 +1.6 338,378 + AZOBR_RS31080 0.20 +1.6 338,383 + AZOBR_RS31080 0.21 -0.1 338,383 + AZOBR_RS31080 0.21 -0.2 338,384 - AZOBR_RS31080 0.21 -0.1 338,403 - AZOBR_RS31080 0.24 -0.0 338,403 - AZOBR_RS31080 0.24 +0.2 338,674 + AZOBR_RS31080 0.62 -0.9 338,674 + AZOBR_RS31080 0.62 +1.5 338,675 - AZOBR_RS31080 0.62 +2.2 338,991 + +0.5 338,992 - -1.8 339,007 + +0.2 339,008 - +1.8 339,008 - -0.3 339,097 + AZOBR_RS31085 0.12 +1.4 339,097 + AZOBR_RS31085 0.12 +0.2 339,098 - AZOBR_RS31085 0.12 -0.3 339,098 - AZOBR_RS31085 0.12 -0.3 339,098 - AZOBR_RS31085 0.12 +0.4 339,194 - AZOBR_RS31085 0.25 -0.3 339,515 - AZOBR_RS31085 0.68 +0.8 339,517 + AZOBR_RS31085 0.68 +0.4 340,243 + AZOBR_RS31090 0.41 +0.1 340,244 - +2.4 340,372 + AZOBR_RS31090 0.59 +0.5 340,372 + AZOBR_RS31090 0.59 -2.3 340,373 - AZOBR_RS31090 0.60 -0.1 340,492 + AZOBR_RS31090 0.76 -0.3 340,492 + AZOBR_RS31090 0.76 +1.6 340,493 - AZOBR_RS31090 0.77 -1.3 340,495 + AZOBR_RS31090 0.77 +2.6 340,495 + AZOBR_RS31090 0.77 -1.7 340,657 + +0.1 340,657 + -0.2
Or see this region's nucleotide sequence