Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31060 and AZOBR_RS31065 are separated by 279 nucleotides AZOBR_RS31065 and AZOBR_RS31070 overlap by 4 nucleotides AZOBR_RS31070 and AZOBR_RS31075 are separated by 73 nucleotides
AZOBR_RS31060: AZOBR_RS31060 - isochorismatase hydrolase, at 334,958 to 335,710
_RS31060
AZOBR_RS31065: AZOBR_RS31065 - hypothetical protein, at 335,990 to 336,550
_RS31065
AZOBR_RS31070: AZOBR_RS31070 - hypothetical protein, at 336,547 to 337,155
_RS31070
AZOBR_RS31075: AZOBR_RS31075 - UTP--glucose-1-phosphate uridylyltransferase, at 337,229 to 338,098
_RS31075
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 335.634 kb on + strand, within AZOBR_RS31060 at 335.876 kb on + strand at 335.876 kb on + strand at 335.876 kb on + strand at 335.876 kb on + strand at 335.877 kb on - strand at 335.877 kb on - strand at 335.877 kb on - strand at 335.947 kb on + strand at 335.948 kb on - strand at 335.979 kb on - strand at 335.979 kb on - strand at 336.398 kb on + strand, within AZOBR_RS31065 at 336.399 kb on - strand, within AZOBR_RS31065 at 336.565 kb on + strand at 336.565 kb on + strand at 336.566 kb on - strand at 336.710 kb on - strand, within AZOBR_RS31070 at 336.710 kb on - strand, within AZOBR_RS31070 at 336.827 kb on - strand, within AZOBR_RS31070 at 337.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 335,634 + AZOBR_RS31060 0.90 +1.8 335,876 + -3.3 335,876 + +2.4 335,876 + -0.0 335,876 + +0.6 335,877 - -1.0 335,877 - -2.0 335,877 - -0.5 335,947 + -2.9 335,948 - -0.6 335,979 - -1.9 335,979 - +0.5 336,398 + AZOBR_RS31065 0.73 -0.2 336,399 - AZOBR_RS31065 0.73 -1.2 336,565 + -0.2 336,565 + -1.5 336,566 - +0.0 336,710 - AZOBR_RS31070 0.27 +0.2 336,710 - AZOBR_RS31070 0.27 -0.2 336,827 - AZOBR_RS31070 0.46 -1.3 337,237 - +1.4
Or see this region's nucleotide sequence