Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30400

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS30395 and AZOBR_RS30400 are separated by 529 nucleotidesAZOBR_RS30400 and AZOBR_RS30405 are separated by 75 nucleotides AZOBR_RS30395: AZOBR_RS30395 - transporter, at 165,301 to 166,989 _RS30395 AZOBR_RS30400: AZOBR_RS30400 - ABC transporter substrate-binding protein, at 167,519 to 168,865 _RS30400 AZOBR_RS30405: AZOBR_RS30405 - ABC transporter permease, at 168,941 to 170,653 _RS30405 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.782 kb on - strand, within AZOBR_RS30395at 166.782 kb on - strand, within AZOBR_RS30395at 166.942 kb on + strandat 167.094 kb on + strandat 167.105 kb on - strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.729 kb on + strand, within AZOBR_RS30400at 167.730 kb on - strand, within AZOBR_RS30400at 167.828 kb on + strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.921 kb on + strand, within AZOBR_RS30400at 167.922 kb on - strand, within AZOBR_RS30400at 168.006 kb on - strand, within AZOBR_RS30400at 168.006 kb on - strand, within AZOBR_RS30400at 168.008 kb on + strand, within AZOBR_RS30400at 168.008 kb on + strand, within AZOBR_RS30400at 168.009 kb on - strand, within AZOBR_RS30400at 168.131 kb on + strand, within AZOBR_RS30400at 168.132 kb on - strand, within AZOBR_RS30400at 168.132 kb on - strand, within AZOBR_RS30400at 168.132 kb on - strand, within AZOBR_RS30400at 168.260 kb on + strand, within AZOBR_RS30400at 168.261 kb on - strand, within AZOBR_RS30400at 168.422 kb on + strand, within AZOBR_RS30400at 168.423 kb on - strand, within AZOBR_RS30400at 168.516 kb on - strand, within AZOBR_RS30400at 168.815 kb on + strandat 168.815 kb on + strandat 168.816 kb on - strandat 168.816 kb on - strandat 169.166 kb on + strand, within AZOBR_RS30405at 169.166 kb on + strand, within AZOBR_RS30405at 169.166 kb on + strand, within AZOBR_RS30405at 169.167 kb on - strand, within AZOBR_RS30405at 169.167 kb on - strand, within AZOBR_RS30405at 169.220 kb on + strand, within AZOBR_RS30405at 169.221 kb on - strand, within AZOBR_RS30405at 169.434 kb on - strand, within AZOBR_RS30405at 169.709 kb on + strand, within AZOBR_RS30405at 169.710 kb on - strand, within AZOBR_RS30405at 169.710 kb on - strand, within AZOBR_RS30405at 169.710 kb on - strand, within AZOBR_RS30405at 169.710 kb on - strand, within AZOBR_RS30405at 169.788 kb on - strand, within AZOBR_RS30405at 169.860 kb on - strand, within AZOBR_RS30405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
remove
166,782 - AZOBR_RS30395 0.88 +2.4
166,782 - AZOBR_RS30395 0.88 +0.6
166,942 + -0.8
167,094 + +3.4
167,105 - +0.7
167,514 + +0.1
167,514 + +0.6
167,514 + -0.3
167,514 + +1.6
167,514 + -0.4
167,514 + -0.4
167,514 + -0.2
167,514 + +1.2
167,514 + +0.7
167,515 - +0.6
167,515 - -0.1
167,515 - +0.2
167,515 - +1.1
167,515 - +0.9
167,518 + +0.1
167,518 + +0.0
167,518 + +0.5
167,518 + +1.7
167,518 + -0.6
167,518 + -0.6
167,518 + -0.2
167,518 + +0.1
167,518 + -0.0
167,518 + -0.8
167,518 + +1.5
167,518 + -1.0
167,518 + -2.8
167,518 + -1.0
167,518 + -0.0
167,519 - -0.1
167,519 - -0.3
167,519 - +0.1
167,519 - -2.0
167,519 - -0.4
167,519 - -1.2
167,519 - +1.3
167,519 - -2.3
167,519 - -1.3
167,519 - +0.9
167,519 - +1.4
167,519 - +0.4
167,519 - -1.1
167,519 - -0.6
167,729 + AZOBR_RS30400 0.16 -0.4
167,730 - AZOBR_RS30400 0.16 +0.5
167,828 + AZOBR_RS30400 0.23 -0.1
167,829 - AZOBR_RS30400 0.23 +0.4
167,829 - AZOBR_RS30400 0.23 -0.0
167,829 - AZOBR_RS30400 0.23 +0.8
167,897 + AZOBR_RS30400 0.28 -0.9
167,897 + AZOBR_RS30400 0.28 +0.7
167,897 + AZOBR_RS30400 0.28 -3.0
167,897 + AZOBR_RS30400 0.28 -0.5
167,897 + AZOBR_RS30400 0.28 -1.1
167,898 - AZOBR_RS30400 0.28 -3.3
167,898 - AZOBR_RS30400 0.28 +0.4
167,898 - AZOBR_RS30400 0.28 +0.6
167,898 - AZOBR_RS30400 0.28 -2.7
167,898 - AZOBR_RS30400 0.28 +0.8
167,898 - AZOBR_RS30400 0.28 +0.7
167,898 - AZOBR_RS30400 0.28 -2.6
167,898 - AZOBR_RS30400 0.28 -0.1
167,898 - AZOBR_RS30400 0.28 +0.9
167,921 + AZOBR_RS30400 0.30 -1.3
167,922 - AZOBR_RS30400 0.30 -0.2
168,006 - AZOBR_RS30400 0.36 -2.6
168,006 - AZOBR_RS30400 0.36 +1.0
168,008 + AZOBR_RS30400 0.36 -0.3
168,008 + AZOBR_RS30400 0.36 -0.4
168,009 - AZOBR_RS30400 0.36 -0.3
168,131 + AZOBR_RS30400 0.45 -0.5
168,132 - AZOBR_RS30400 0.46 +0.0
168,132 - AZOBR_RS30400 0.46 +0.6
168,132 - AZOBR_RS30400 0.46 +0.6
168,260 + AZOBR_RS30400 0.55 -0.7
168,261 - AZOBR_RS30400 0.55 -0.9
168,422 + AZOBR_RS30400 0.67 +1.4
168,423 - AZOBR_RS30400 0.67 -2.7
168,516 - AZOBR_RS30400 0.74 -1.8
168,815 + +1.1
168,815 + -0.8
168,816 - +1.3
168,816 - -1.0
169,166 + AZOBR_RS30405 0.13 -2.4
169,166 + AZOBR_RS30405 0.13 -0.4
169,166 + AZOBR_RS30405 0.13 +0.4
169,167 - AZOBR_RS30405 0.13 -0.3
169,167 - AZOBR_RS30405 0.13 +0.1
169,220 + AZOBR_RS30405 0.16 -0.9
169,221 - AZOBR_RS30405 0.16 +0.2
169,434 - AZOBR_RS30405 0.29 +1.4
169,709 + AZOBR_RS30405 0.45 -0.9
169,710 - AZOBR_RS30405 0.45 -0.8
169,710 - AZOBR_RS30405 0.45 -0.2
169,710 - AZOBR_RS30405 0.45 +0.1
169,710 - AZOBR_RS30405 0.45 +0.2
169,788 - AZOBR_RS30405 0.49 +0.4
169,860 - AZOBR_RS30405 0.54 -0.3

Or see this region's nucleotide sequence