Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30080 and AZOBR_RS30085 are separated by 309 nucleotides AZOBR_RS30085 and AZOBR_RS30090 are separated by 75 nucleotides AZOBR_RS30090 and AZOBR_RS30095 are separated by 129 nucleotides
AZOBR_RS30080: AZOBR_RS30080 - flagellar hook protein, at 88,065 to 89,297
_RS30080
AZOBR_RS30085: AZOBR_RS30085 - DNA-binding protein, at 89,607 to 90,215
_RS30085
AZOBR_RS30090: AZOBR_RS30090 - hypothetical protein, at 90,291 to 90,614
_RS30090
AZOBR_RS30095: AZOBR_RS30095 - hypothetical protein, at 90,744 to 91,787
_RS30095
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 88.718 kb on - strand, within AZOBR_RS30080 at 88.810 kb on + strand, within AZOBR_RS30080 at 88.910 kb on - strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.099 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.192 kb on - strand at 89.314 kb on + strand at 89.315 kb on - strand at 89.376 kb on - strand at 89.401 kb on - strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.653 kb on - strand at 89.653 kb on - strand at 89.653 kb on - strand at 90.012 kb on + strand, within AZOBR_RS30085 at 90.012 kb on + strand, within AZOBR_RS30085 at 90.013 kb on - strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.031 kb on - strand, within AZOBR_RS30085 at 90.093 kb on + strand, within AZOBR_RS30085 at 90.094 kb on - strand, within AZOBR_RS30085 at 90.377 kb on - strand, within AZOBR_RS30090 at 90.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 88,718 - AZOBR_RS30080 0.53 -1.4 88,810 + AZOBR_RS30080 0.60 -0.2 88,910 - AZOBR_RS30080 0.69 +0.6 89,098 + AZOBR_RS30080 0.84 -0.5 89,098 + AZOBR_RS30080 0.84 -1.9 89,099 - AZOBR_RS30080 0.84 +0.2 89,132 - AZOBR_RS30080 0.87 -3.1 89,132 - AZOBR_RS30080 0.87 +0.9 89,192 - +0.6 89,314 + +0.3 89,315 - -2.8 89,376 - +0.6 89,401 - -1.6 89,652 + -0.7 89,652 + +0.4 89,652 + +0.2 89,653 - +0.4 89,653 - +1.0 89,653 - +0.3 90,012 + AZOBR_RS30085 0.67 +0.8 90,012 + AZOBR_RS30085 0.67 +1.0 90,013 - AZOBR_RS30085 0.67 +0.2 90,030 + AZOBR_RS30085 0.69 -1.2 90,030 + AZOBR_RS30085 0.69 +0.9 90,030 + AZOBR_RS30085 0.69 +0.8 90,030 + AZOBR_RS30085 0.69 +0.5 90,030 + AZOBR_RS30085 0.69 +1.4 90,031 - AZOBR_RS30085 0.70 +0.5 90,093 + AZOBR_RS30085 0.80 +0.8 90,094 - AZOBR_RS30085 0.80 +0.6 90,377 - AZOBR_RS30090 0.27 +1.4 90,670 + -0.2
Or see this region's nucleotide sequence