Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29800 and AZOBR_RS29805 are separated by 4 nucleotides AZOBR_RS29805 and AZOBR_RS29810 are separated by 102 nucleotides AZOBR_RS29810 and AZOBR_RS29815 are separated by 97 nucleotides AZOBR_RS29815 and AZOBR_RS29820 are separated by 339 nucleotides
AZOBR_RS29800: AZOBR_RS29800 - hypothetical protein, at 35,326 to 35,916
_RS29800
AZOBR_RS29805: AZOBR_RS29805 - hypothetical protein, at 35,921 to 36,160
_RS29805
AZOBR_RS29810: AZOBR_RS29810 - phosphoribosylglycinamide formyltransferase, at 36,263 to 37,432
_RS29810
AZOBR_RS29815: AZOBR_RS29815 - conserved exported protein of unknown function, at 37,530 to 38,027
_RS29815
AZOBR_RS29820: AZOBR_RS29820 - ABC transporter substrate-binding protein, at 38,367 to 39,398
_RS29820
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.747 kb on - strand, within AZOBR_RS29800 at 35.747 kb on - strand, within AZOBR_RS29800 at 35.749 kb on + strand, within AZOBR_RS29800 at 35.749 kb on + strand, within AZOBR_RS29800 at 35.902 kb on + strand at 35.903 kb on - strand at 36.158 kb on + strand at 36.158 kb on + strand at 36.158 kb on + strand at 36.158 kb on + strand at 36.158 kb on + strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.159 kb on - strand at 36.772 kb on - strand, within AZOBR_RS29810 at 36.921 kb on + strand, within AZOBR_RS29810 at 36.921 kb on + strand, within AZOBR_RS29810 at 36.922 kb on - strand, within AZOBR_RS29810 at 36.922 kb on - strand, within AZOBR_RS29810 at 37.065 kb on + strand, within AZOBR_RS29810 at 37.330 kb on - strand at 37.330 kb on - strand at 37.330 kb on - strand at 37.415 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.510 kb on + strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.532 kb on - strand at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 38.067 kb on - strand at 38.136 kb on + strand at 38.137 kb on - strand at 38.184 kb on + strand at 38.248 kb on - strand at 38.248 kb on - strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 35,747 - AZOBR_RS29800 0.71 +0.5 35,747 - AZOBR_RS29800 0.71 +0.2 35,749 + AZOBR_RS29800 0.72 -0.2 35,749 + AZOBR_RS29800 0.72 +0.4 35,902 + +0.2 35,903 - -0.1 36,158 + -0.1 36,158 + -0.0 36,158 + +0.8 36,158 + -0.1 36,158 + -0.6 36,159 - -0.3 36,159 - -1.6 36,159 - +0.2 36,159 - -0.4 36,159 - -0.8 36,159 - -0.7 36,159 - -2.7 36,772 - AZOBR_RS29810 0.44 +1.1 36,921 + AZOBR_RS29810 0.56 +0.4 36,921 + AZOBR_RS29810 0.56 +0.4 36,922 - AZOBR_RS29810 0.56 -2.5 36,922 - AZOBR_RS29810 0.56 +0.0 37,065 + AZOBR_RS29810 0.69 +2.4 37,330 - +0.5 37,330 - +0.4 37,330 - +0.1 37,415 + -3.0 37,490 + +0.2 37,490 + +0.3 37,490 + -0.8 37,491 - +0.3 37,491 - +0.4 37,491 - -1.8 37,510 + -1.7 37,511 - -0.6 37,511 - +0.9 37,511 - +0.3 37,511 - -0.1 37,532 - -0.7 37,849 + AZOBR_RS29815 0.64 +0.3 37,849 + AZOBR_RS29815 0.64 -0.5 37,849 + AZOBR_RS29815 0.64 +0.0 38,067 - -1.1 38,136 + +0.4 38,137 - +0.4 38,184 + -1.6 38,248 - -0.3 38,248 - -1.0 38,360 + +0.5 38,360 + +0.2 38,360 + -1.5 38,360 + -0.6 38,361 - +1.5 38,361 - -0.8 38,361 - +0.4 38,361 - +0.9 38,361 - +0.4 38,361 - -0.7
Or see this region's nucleotide sequence