Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29535 and AZOBR_RS29540 overlap by 4 nucleotides AZOBR_RS29540 and AZOBR_RS29545 are separated by 157 nucleotides
AZOBR_RS29535: AZOBR_RS29535 - enterobactin exporter, at 748,058 to 749,308
_RS29535
AZOBR_RS29540: AZOBR_RS29540 - putative auxiliary transport protein MFP family, at 749,305 to 750,390
_RS29540
AZOBR_RS29545: AZOBR_RS29545 - acriflavin resistance protein, at 750,548 to 753,712
_RS29545
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 748.397 kb on + strand, within AZOBR_RS29535 at 748.397 kb on + strand, within AZOBR_RS29535 at 748.397 kb on + strand, within AZOBR_RS29535 at 748.398 kb on - strand, within AZOBR_RS29535 at 748.398 kb on - strand, within AZOBR_RS29535 at 748.398 kb on - strand, within AZOBR_RS29535 at 748.398 kb on - strand, within AZOBR_RS29535 at 748.398 kb on - strand, within AZOBR_RS29535 at 748.592 kb on + strand, within AZOBR_RS29535 at 748.592 kb on + strand, within AZOBR_RS29535 at 748.593 kb on - strand, within AZOBR_RS29535 at 748.593 kb on - strand, within AZOBR_RS29535 at 748.850 kb on + strand, within AZOBR_RS29535 at 748.850 kb on + strand, within AZOBR_RS29535 at 748.851 kb on - strand, within AZOBR_RS29535 at 748.851 kb on - strand, within AZOBR_RS29535 at 748.851 kb on - strand, within AZOBR_RS29535 at 748.851 kb on - strand, within AZOBR_RS29535 at 748.851 kb on - strand, within AZOBR_RS29535 at 748.994 kb on + strand, within AZOBR_RS29535 at 748.994 kb on + strand, within AZOBR_RS29535 at 748.995 kb on - strand, within AZOBR_RS29535 at 748.995 kb on - strand, within AZOBR_RS29535 at 748.995 kb on - strand, within AZOBR_RS29535 at 748.995 kb on - strand, within AZOBR_RS29535 at 749.057 kb on + strand, within AZOBR_RS29535 at 749.057 kb on + strand, within AZOBR_RS29535 at 749.058 kb on - strand, within AZOBR_RS29535 at 749.391 kb on - strand at 749.849 kb on + strand, within AZOBR_RS29540 at 750.457 kb on + strand at 750.493 kb on + strand at 750.493 kb on + strand at 750.494 kb on - strand at 750.749 kb on + strand at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 748,397 + AZOBR_RS29535 0.27 -0.3 748,397 + AZOBR_RS29535 0.27 -0.3 748,397 + AZOBR_RS29535 0.27 -1.0 748,398 - AZOBR_RS29535 0.27 +0.4 748,398 - AZOBR_RS29535 0.27 +0.8 748,398 - AZOBR_RS29535 0.27 +2.3 748,398 - AZOBR_RS29535 0.27 -1.2 748,398 - AZOBR_RS29535 0.27 -0.4 748,592 + AZOBR_RS29535 0.43 -1.1 748,592 + AZOBR_RS29535 0.43 -0.6 748,593 - AZOBR_RS29535 0.43 -1.4 748,593 - AZOBR_RS29535 0.43 +0.4 748,850 + AZOBR_RS29535 0.63 +0.6 748,850 + AZOBR_RS29535 0.63 -0.4 748,851 - AZOBR_RS29535 0.63 -0.5 748,851 - AZOBR_RS29535 0.63 -0.0 748,851 - AZOBR_RS29535 0.63 +1.3 748,851 - AZOBR_RS29535 0.63 +1.0 748,851 - AZOBR_RS29535 0.63 -0.1 748,994 + AZOBR_RS29535 0.75 +0.4 748,994 + AZOBR_RS29535 0.75 +0.1 748,995 - AZOBR_RS29535 0.75 +0.9 748,995 - AZOBR_RS29535 0.75 -2.3 748,995 - AZOBR_RS29535 0.75 +1.3 748,995 - AZOBR_RS29535 0.75 +0.1 749,057 + AZOBR_RS29535 0.80 +0.3 749,057 + AZOBR_RS29535 0.80 +1.3 749,058 - AZOBR_RS29535 0.80 -0.4 749,391 - -0.2 749,849 + AZOBR_RS29540 0.50 -0.6 750,457 + +0.0 750,493 + +0.2 750,493 + +0.3 750,494 - +1.2 750,749 + -0.7 751,229 + AZOBR_RS29545 0.22 +0.3 751,229 + AZOBR_RS29545 0.22 +0.5 751,229 + AZOBR_RS29545 0.22 +1.0
Or see this region's nucleotide sequence