Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28680

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28670 and AZOBR_RS28675 are separated by 99 nucleotidesAZOBR_RS28675 and AZOBR_RS28680 are separated by 144 nucleotidesAZOBR_RS28680 and AZOBR_RS28685 are separated by 42 nucleotidesAZOBR_RS28685 and AZOBR_RS28690 are separated by 0 nucleotides AZOBR_RS28670: AZOBR_RS28670 - hypothetical protein, at 599,478 to 600,170 _RS28670 AZOBR_RS28675: AZOBR_RS28675 - exported protein of unknown function, at 600,270 to 600,524 _RS28675 AZOBR_RS28680: AZOBR_RS28680 - muraminidase, at 600,669 to 601,112 _RS28680 AZOBR_RS28685: AZOBR_RS28685 - hypothetical protein, at 601,155 to 602,102 _RS28685 AZOBR_RS28690: AZOBR_RS28690 - hypothetical protein, at 602,103 to 604,436 _RS28690 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.709 kb on + strand, within AZOBR_RS28670at 599.710 kb on - strand, within AZOBR_RS28670at 599.736 kb on + strand, within AZOBR_RS28670at 599.736 kb on + strand, within AZOBR_RS28670at 599.737 kb on - strand, within AZOBR_RS28670at 599.737 kb on - strand, within AZOBR_RS28670at 599.737 kb on - strand, within AZOBR_RS28670at 599.749 kb on - strand, within AZOBR_RS28670at 599.749 kb on - strand, within AZOBR_RS28670at 599.788 kb on - strand, within AZOBR_RS28670at 599.944 kb on + strand, within AZOBR_RS28670at 599.944 kb on + strand, within AZOBR_RS28670at 599.944 kb on + strand, within AZOBR_RS28670at 599.944 kb on + strand, within AZOBR_RS28670at 599.945 kb on - strand, within AZOBR_RS28670at 599.945 kb on - strand, within AZOBR_RS28670at 599.977 kb on - strand, within AZOBR_RS28670at 599.977 kb on - strand, within AZOBR_RS28670at 600.143 kb on + strandat 600.144 kb on - strandat 600.187 kb on - strandat 600.187 kb on - strandat 600.355 kb on + strand, within AZOBR_RS28675at 600.355 kb on + strand, within AZOBR_RS28675at 600.388 kb on + strand, within AZOBR_RS28675at 600.388 kb on + strand, within AZOBR_RS28675at 600.388 kb on + strand, within AZOBR_RS28675at 600.388 kb on + strand, within AZOBR_RS28675at 600.388 kb on + strand, within AZOBR_RS28675at 600.389 kb on - strand, within AZOBR_RS28675at 600.424 kb on + strand, within AZOBR_RS28675at 600.424 kb on + strand, within AZOBR_RS28675at 600.424 kb on + strand, within AZOBR_RS28675at 600.425 kb on - strand, within AZOBR_RS28675at 600.754 kb on + strand, within AZOBR_RS28680at 600.754 kb on + strand, within AZOBR_RS28680at 600.754 kb on + strand, within AZOBR_RS28680at 600.790 kb on + strand, within AZOBR_RS28680at 600.790 kb on + strand, within AZOBR_RS28680at 601.045 kb on + strand, within AZOBR_RS28680at 601.045 kb on + strand, within AZOBR_RS28680at 601.045 kb on + strand, within AZOBR_RS28680at 601.045 kb on + strand, within AZOBR_RS28680at 601.046 kb on - strand, within AZOBR_RS28680at 601.058 kb on - strand, within AZOBR_RS28680at 601.058 kb on - strand, within AZOBR_RS28680at 601.058 kb on - strand, within AZOBR_RS28680at 601.229 kb on - strandat 601.627 kb on + strand, within AZOBR_RS28685at 601.627 kb on + strand, within AZOBR_RS28685at 601.627 kb on + strand, within AZOBR_RS28685at 601.627 kb on + strand, within AZOBR_RS28685at 601.628 kb on - strand, within AZOBR_RS28685at 601.663 kb on + strand, within AZOBR_RS28685at 601.720 kb on + strand, within AZOBR_RS28685at 601.801 kb on + strand, within AZOBR_RS28685at 601.802 kb on - strand, within AZOBR_RS28685at 601.802 kb on - strand, within AZOBR_RS28685at 601.817 kb on - strand, within AZOBR_RS28685at 601.817 kb on - strand, within AZOBR_RS28685at 601.988 kb on - strand, within AZOBR_RS28685at 602.104 kb on + strandat 602.105 kb on - strandat 602.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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599,709 + AZOBR_RS28670 0.33 -0.2
599,710 - AZOBR_RS28670 0.33 -1.3
599,736 + AZOBR_RS28670 0.37 +0.1
599,736 + AZOBR_RS28670 0.37 +1.4
599,737 - AZOBR_RS28670 0.37 +1.0
599,737 - AZOBR_RS28670 0.37 -0.1
599,737 - AZOBR_RS28670 0.37 +0.8
599,749 - AZOBR_RS28670 0.39 +1.8
599,749 - AZOBR_RS28670 0.39 +0.4
599,788 - AZOBR_RS28670 0.45 +0.4
599,944 + AZOBR_RS28670 0.67 -1.3
599,944 + AZOBR_RS28670 0.67 -0.2
599,944 + AZOBR_RS28670 0.67 +0.8
599,944 + AZOBR_RS28670 0.67 -0.2
599,945 - AZOBR_RS28670 0.67 +0.1
599,945 - AZOBR_RS28670 0.67 +3.0
599,977 - AZOBR_RS28670 0.72 -2.8
599,977 - AZOBR_RS28670 0.72 -3.2
600,143 + +0.7
600,144 - +1.3
600,187 - +0.3
600,187 - -0.2
600,355 + AZOBR_RS28675 0.33 -1.6
600,355 + AZOBR_RS28675 0.33 -0.0
600,388 + AZOBR_RS28675 0.46 +0.6
600,388 + AZOBR_RS28675 0.46 -1.0
600,388 + AZOBR_RS28675 0.46 +0.4
600,388 + AZOBR_RS28675 0.46 +0.0
600,388 + AZOBR_RS28675 0.46 -0.1
600,389 - AZOBR_RS28675 0.47 -0.2
600,424 + AZOBR_RS28675 0.60 +0.2
600,424 + AZOBR_RS28675 0.60 -0.3
600,424 + AZOBR_RS28675 0.60 +1.8
600,425 - AZOBR_RS28675 0.61 +0.3
600,754 + AZOBR_RS28680 0.19 +0.9
600,754 + AZOBR_RS28680 0.19 +1.5
600,754 + AZOBR_RS28680 0.19 -0.2
600,790 + AZOBR_RS28680 0.27 +1.3
600,790 + AZOBR_RS28680 0.27 +0.0
601,045 + AZOBR_RS28680 0.85 +0.9
601,045 + AZOBR_RS28680 0.85 +1.6
601,045 + AZOBR_RS28680 0.85 -2.9
601,045 + AZOBR_RS28680 0.85 -0.4
601,046 - AZOBR_RS28680 0.85 +0.2
601,058 - AZOBR_RS28680 0.88 -1.5
601,058 - AZOBR_RS28680 0.88 +0.3
601,058 - AZOBR_RS28680 0.88 +0.4
601,229 - +2.8
601,627 + AZOBR_RS28685 0.50 +0.5
601,627 + AZOBR_RS28685 0.50 +0.9
601,627 + AZOBR_RS28685 0.50 +0.3
601,627 + AZOBR_RS28685 0.50 -0.0
601,628 - AZOBR_RS28685 0.50 +1.4
601,663 + AZOBR_RS28685 0.54 -0.5
601,720 + AZOBR_RS28685 0.60 +0.6
601,801 + AZOBR_RS28685 0.68 -0.8
601,802 - AZOBR_RS28685 0.68 -0.0
601,802 - AZOBR_RS28685 0.68 -2.8
601,817 - AZOBR_RS28685 0.70 -0.7
601,817 - AZOBR_RS28685 0.70 -0.0
601,988 - AZOBR_RS28685 0.88 -0.3
602,104 + -0.2
602,105 - +0.6
602,105 - -1.0

Or see this region's nucleotide sequence