Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28095 and AZOBR_RS28100 are separated by 298 nucleotides AZOBR_RS28100 and AZOBR_RS28105 are separated by 146 nucleotides
AZOBR_RS28095: AZOBR_RS28095 - transporter, at 474,576 to 475,436
_RS28095
AZOBR_RS28100: AZOBR_RS28100 - LysR family transcriptional regulator, at 475,735 to 476,625
_RS28100
AZOBR_RS28105: AZOBR_RS28105 - hypothetical protein, at 476,772 to 477,896
_RS28105
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2 at 474.791 kb on - strand, within AZOBR_RS28095 at 474.791 kb on - strand, within AZOBR_RS28095 at 474.947 kb on - strand, within AZOBR_RS28095 at 475.517 kb on + strand at 475.518 kb on - strand at 475.535 kb on + strand at 475.536 kb on - strand at 475.536 kb on - strand at 475.541 kb on + strand at 475.542 kb on - strand at 475.642 kb on + strand at 475.965 kb on - strand, within AZOBR_RS28100 at 476.309 kb on + strand, within AZOBR_RS28100 at 476.310 kb on - strand, within AZOBR_RS28100 at 476.310 kb on - strand, within AZOBR_RS28100 at 477.015 kb on + strand, within AZOBR_RS28105 at 477.015 kb on + strand, within AZOBR_RS28105 at 477.015 kb on + strand, within AZOBR_RS28105 at 477.015 kb on + strand, within AZOBR_RS28105 at 477.220 kb on - strand, within AZOBR_RS28105 at 477.459 kb on + strand, within AZOBR_RS28105
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 474,791 - AZOBR_RS28095 0.25 +2.3 474,791 - AZOBR_RS28095 0.25 +0.9 474,947 - AZOBR_RS28095 0.43 +0.7 475,517 + +0.2 475,518 - +0.9 475,535 + +0.6 475,536 - +0.8 475,536 - -2.7 475,541 + +0.5 475,542 - +1.1 475,642 + +0.2 475,965 - AZOBR_RS28100 0.26 -1.9 476,309 + AZOBR_RS28100 0.64 +0.9 476,310 - AZOBR_RS28100 0.65 -0.9 476,310 - AZOBR_RS28100 0.65 -0.1 477,015 + AZOBR_RS28105 0.22 -0.6 477,015 + AZOBR_RS28105 0.22 -0.7 477,015 + AZOBR_RS28105 0.22 +0.1 477,015 + AZOBR_RS28105 0.22 -0.3 477,220 - AZOBR_RS28105 0.40 +1.6 477,459 + AZOBR_RS28105 0.61 -0.6
Or see this region's nucleotide sequence