Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27230 and AZOBR_RS27235 are separated by 150 nucleotides AZOBR_RS27235 and AZOBR_RS27240 overlap by 4 nucleotides
AZOBR_RS27230: AZOBR_RS27230 - hypothetical protein, at 251,115 to 251,426
_RS27230
AZOBR_RS27235: AZOBR_RS27235 - exported protein of unknown function, at 251,577 to 253,319
_RS27235
AZOBR_RS27240: AZOBR_RS27240 - hypothetical protein, at 253,316 to 255,229
_RS27240
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 250.776 kb on - strand at 251.271 kb on + strand, within AZOBR_RS27230 at 251.307 kb on + strand, within AZOBR_RS27230 at 251.308 kb on - strand, within AZOBR_RS27230 at 251.459 kb on + strand at 251.459 kb on + strand at 251.459 kb on + strand at 251.459 kb on + strand at 251.459 kb on + strand at 251.459 kb on + strand at 251.459 kb on + strand at 251.460 kb on - strand at 251.460 kb on - strand at 251.460 kb on - strand at 251.460 kb on - strand at 251.460 kb on - strand at 251.460 kb on - strand at 251.501 kb on + strand at 251.501 kb on + strand at 251.502 kb on - strand at 251.671 kb on + strand at 251.672 kb on - strand at 251.672 kb on - strand at 251.690 kb on + strand at 251.690 kb on + strand at 251.691 kb on - strand at 251.691 kb on - strand at 251.691 kb on - strand at 251.691 kb on - strand at 252.031 kb on + strand, within AZOBR_RS27235 at 252.032 kb on - strand, within AZOBR_RS27235 at 252.032 kb on - strand, within AZOBR_RS27235 at 252.032 kb on - strand, within AZOBR_RS27235 at 252.100 kb on + strand, within AZOBR_RS27235 at 252.101 kb on - strand, within AZOBR_RS27235 at 252.101 kb on - strand, within AZOBR_RS27235 at 252.101 kb on - strand, within AZOBR_RS27235 at 252.220 kb on + strand, within AZOBR_RS27235 at 252.220 kb on + strand, within AZOBR_RS27235 at 252.221 kb on - strand, within AZOBR_RS27235 at 252.221 kb on - strand, within AZOBR_RS27235 at 252.388 kb on + strand, within AZOBR_RS27235 at 252.388 kb on + strand, within AZOBR_RS27235 at 252.388 kb on + strand, within AZOBR_RS27235 at 252.388 kb on + strand, within AZOBR_RS27235 at 252.389 kb on - strand, within AZOBR_RS27235 at 252.389 kb on - strand, within AZOBR_RS27235 at 252.466 kb on + strand at 252.563 kb on - strand, within AZOBR_RS27235 at 252.889 kb on + strand, within AZOBR_RS27235 at 252.889 kb on + strand, within AZOBR_RS27235 at 252.890 kb on - strand, within AZOBR_RS27235 at 253.021 kb on + strand, within AZOBR_RS27235 at 253.021 kb on + strand, within AZOBR_RS27235 at 253.021 kb on + strand, within AZOBR_RS27235 at 253.021 kb on + strand, within AZOBR_RS27235 at 253.022 kb on - strand, within AZOBR_RS27235 at 253.022 kb on - strand, within AZOBR_RS27235 at 253.485 kb on + strand at 253.486 kb on - strand at 253.492 kb on - strand at 253.492 kb on - strand at 253.684 kb on + strand, within AZOBR_RS27240 at 253.684 kb on + strand, within AZOBR_RS27240 at 253.684 kb on + strand, within AZOBR_RS27240 at 253.684 kb on + strand, within AZOBR_RS27240 at 253.784 kb on - strand, within AZOBR_RS27240 at 253.784 kb on - strand, within AZOBR_RS27240 at 253.834 kb on + strand, within AZOBR_RS27240
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 250,776 - -0.6 251,271 + AZOBR_RS27230 0.50 +0.3 251,307 + AZOBR_RS27230 0.62 -0.0 251,308 - AZOBR_RS27230 0.62 +0.7 251,459 + -2.5 251,459 + +0.4 251,459 + +0.5 251,459 + +0.4 251,459 + -2.2 251,459 + +1.3 251,459 + +1.3 251,460 - -0.8 251,460 - -0.3 251,460 - -0.5 251,460 - -1.8 251,460 - -0.3 251,460 - -0.4 251,501 + -1.9 251,501 + +0.3 251,502 - +1.1 251,671 + +0.2 251,672 - +0.6 251,672 - -0.9 251,690 + +0.1 251,690 + -0.9 251,691 - -1.5 251,691 - -1.3 251,691 - +0.6 251,691 - -1.6 252,031 + AZOBR_RS27235 0.26 -0.4 252,032 - AZOBR_RS27235 0.26 -2.7 252,032 - AZOBR_RS27235 0.26 -0.7 252,032 - AZOBR_RS27235 0.26 -3.0 252,100 + AZOBR_RS27235 0.30 +0.0 252,101 - AZOBR_RS27235 0.30 -0.3 252,101 - AZOBR_RS27235 0.30 -2.1 252,101 - AZOBR_RS27235 0.30 -1.0 252,220 + AZOBR_RS27235 0.37 +0.1 252,220 + AZOBR_RS27235 0.37 +0.4 252,221 - AZOBR_RS27235 0.37 +2.3 252,221 - AZOBR_RS27235 0.37 -1.2 252,388 + AZOBR_RS27235 0.47 +1.1 252,388 + AZOBR_RS27235 0.47 +0.2 252,388 + AZOBR_RS27235 0.47 -1.6 252,388 + AZOBR_RS27235 0.47 -0.9 252,389 - AZOBR_RS27235 0.47 -0.1 252,389 - AZOBR_RS27235 0.47 +0.1 252,466 + +2.3 252,563 - AZOBR_RS27235 0.57 -0.3 252,889 + AZOBR_RS27235 0.75 -2.0 252,889 + AZOBR_RS27235 0.75 -0.0 252,890 - AZOBR_RS27235 0.75 -2.5 253,021 + AZOBR_RS27235 0.83 +0.2 253,021 + AZOBR_RS27235 0.83 +2.9 253,021 + AZOBR_RS27235 0.83 -1.0 253,021 + AZOBR_RS27235 0.83 +0.1 253,022 - AZOBR_RS27235 0.83 +0.3 253,022 - AZOBR_RS27235 0.83 -0.4 253,485 + +0.0 253,486 - -1.3 253,492 - +0.8 253,492 - -2.8 253,684 + AZOBR_RS27240 0.19 -0.0 253,684 + AZOBR_RS27240 0.19 +1.2 253,684 + AZOBR_RS27240 0.19 -1.3 253,684 + AZOBR_RS27240 0.19 +0.4 253,784 - AZOBR_RS27240 0.24 +0.3 253,784 - AZOBR_RS27240 0.24 -2.9 253,834 + AZOBR_RS27240 0.27 +1.4
Or see this region's nucleotide sequence