Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25905 and AZOBR_RS25910 are separated by 12 nucleotides AZOBR_RS25910 and AZOBR_RS25915 overlap by 11 nucleotides AZOBR_RS25915 and AZOBR_RS25920 are separated by 49 nucleotides
AZOBR_RS25905: AZOBR_RS25905 - glycerol kinase, at 866,599 to 868,104
_RS25905
AZOBR_RS25910: AZOBR_RS25910 - oxidoreductase, at 868,117 to 868,890
_RS25910
AZOBR_RS25915: AZOBR_RS25915 - ATPase, at 868,880 to 869,446
_RS25915
AZOBR_RS25920: AZOBR_RS25920 - flavodoxin, at 869,496 to 869,963
_RS25920
Position (kb) 868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 867.496 kb on + strand, within AZOBR_RS25905 at 867.497 kb on - strand, within AZOBR_RS25905 at 867.497 kb on - strand, within AZOBR_RS25905 at 867.625 kb on + strand, within AZOBR_RS25905 at 867.626 kb on - strand, within AZOBR_RS25905 at 868.215 kb on - strand, within AZOBR_RS25910 at 868.303 kb on + strand, within AZOBR_RS25910 at 868.303 kb on + strand, within AZOBR_RS25910 at 868.304 kb on - strand, within AZOBR_RS25910 at 868.600 kb on + strand, within AZOBR_RS25910 at 868.600 kb on + strand, within AZOBR_RS25910 at 868.840 kb on + strand at 868.972 kb on - strand, within AZOBR_RS25915 at 868.987 kb on - strand, within AZOBR_RS25915 at 869.470 kb on + strand at 869.471 kb on - strand at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.733 kb on + strand, within AZOBR_RS25920 at 869.733 kb on + strand, within AZOBR_RS25920 at 869.734 kb on - strand, within AZOBR_RS25920 at 869.734 kb on - strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.737 kb on - strand, within AZOBR_RS25920 at 869.737 kb on - strand, within AZOBR_RS25920 at 869.769 kb on + strand, within AZOBR_RS25920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 867,496 + AZOBR_RS25905 0.60 +0.7 867,497 - AZOBR_RS25905 0.60 +0.9 867,497 - AZOBR_RS25905 0.60 +0.9 867,625 + AZOBR_RS25905 0.68 +0.8 867,626 - AZOBR_RS25905 0.68 +0.3 868,215 - AZOBR_RS25910 0.13 +1.0 868,303 + AZOBR_RS25910 0.24 +1.7 868,303 + AZOBR_RS25910 0.24 -0.7 868,304 - AZOBR_RS25910 0.24 +1.0 868,600 + AZOBR_RS25910 0.62 -0.1 868,600 + AZOBR_RS25910 0.62 -0.1 868,840 + +0.2 868,972 - AZOBR_RS25915 0.16 +0.2 868,987 - AZOBR_RS25915 0.19 -0.5 869,470 + -2.8 869,471 - +0.2 869,694 + AZOBR_RS25920 0.42 -0.3 869,694 + AZOBR_RS25920 0.42 +0.5 869,694 + AZOBR_RS25920 0.42 +0.0 869,694 + AZOBR_RS25920 0.42 -1.2 869,696 + AZOBR_RS25920 0.43 +0.0 869,696 + AZOBR_RS25920 0.43 +1.1 869,696 + AZOBR_RS25920 0.43 +0.5 869,696 + AZOBR_RS25920 0.43 -0.3 869,697 - AZOBR_RS25920 0.43 +0.8 869,697 - AZOBR_RS25920 0.43 +1.5 869,697 - AZOBR_RS25920 0.43 -0.4 869,697 - AZOBR_RS25920 0.43 +0.5 869,733 + AZOBR_RS25920 0.51 +0.1 869,733 + AZOBR_RS25920 0.51 -0.1 869,734 - AZOBR_RS25920 0.51 +0.4 869,734 - AZOBR_RS25920 0.51 +0.1 869,736 + AZOBR_RS25920 0.51 +1.3 869,736 + AZOBR_RS25920 0.51 +0.8 869,736 + AZOBR_RS25920 0.51 -0.6 869,737 - AZOBR_RS25920 0.51 -0.0 869,737 - AZOBR_RS25920 0.51 +0.3 869,769 + AZOBR_RS25920 0.58 -0.1
Or see this region's nucleotide sequence