Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25680 and AZOBR_RS25685 are separated by 97 nucleotides AZOBR_RS25685 and AZOBR_RS25690 are separated by 51 nucleotides
AZOBR_RS25680: AZOBR_RS25680 - hypothetical protein, at 810,681 to 811,502
_RS25680
AZOBR_RS25685: AZOBR_RS25685 - hypothetical protein, at 811,600 to 811,965
_RS25685
AZOBR_RS25690: AZOBR_RS25690 - signal peptide protein, at 812,017 to 812,706
_RS25690
Position (kb) 811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 810.743 kb on - strand at 810.743 kb on - strand at 810.751 kb on + strand at 810.802 kb on + strand, within AZOBR_RS25680 at 810.802 kb on + strand, within AZOBR_RS25680 at 811.283 kb on + strand, within AZOBR_RS25680 at 811.283 kb on + strand, within AZOBR_RS25680 at 811.284 kb on - strand, within AZOBR_RS25680 at 811.284 kb on - strand, within AZOBR_RS25680 at 811.321 kb on + strand, within AZOBR_RS25680 at 811.321 kb on + strand, within AZOBR_RS25680 at 811.322 kb on - strand, within AZOBR_RS25680 at 811.630 kb on + strand at 811.631 kb on - strand at 811.642 kb on + strand, within AZOBR_RS25685 at 811.643 kb on - strand, within AZOBR_RS25685 at 811.643 kb on - strand, within AZOBR_RS25685 at 811.870 kb on + strand, within AZOBR_RS25685 at 811.871 kb on - strand, within AZOBR_RS25685 at 811.871 kb on - strand at 811.871 kb on - strand, within AZOBR_RS25685 at 812.180 kb on + strand, within AZOBR_RS25690 at 812.181 kb on - strand, within AZOBR_RS25690 at 812.181 kb on - strand, within AZOBR_RS25690 at 812.181 kb on - strand, within AZOBR_RS25690 at 812.441 kb on + strand, within AZOBR_RS25690 at 812.442 kb on - strand, within AZOBR_RS25690 at 812.442 kb on - strand, within AZOBR_RS25690 at 812.512 kb on + strand, within AZOBR_RS25690 at 812.512 kb on + strand, within AZOBR_RS25690 at 812.737 kb on - strand at 812.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 810,743 - -0.6 810,743 - -0.3 810,751 + +0.1 810,802 + AZOBR_RS25680 0.15 -0.3 810,802 + AZOBR_RS25680 0.15 +0.6 811,283 + AZOBR_RS25680 0.73 +0.0 811,283 + AZOBR_RS25680 0.73 -0.2 811,284 - AZOBR_RS25680 0.73 -1.0 811,284 - AZOBR_RS25680 0.73 -1.6 811,321 + AZOBR_RS25680 0.78 -0.3 811,321 + AZOBR_RS25680 0.78 +0.6 811,322 - AZOBR_RS25680 0.78 -0.9 811,630 + +0.1 811,631 - -0.8 811,642 + AZOBR_RS25685 0.11 +0.5 811,643 - AZOBR_RS25685 0.12 -1.2 811,643 - AZOBR_RS25685 0.12 -0.4 811,870 + AZOBR_RS25685 0.74 -0.1 811,871 - AZOBR_RS25685 0.74 -1.7 811,871 - +2.3 811,871 - AZOBR_RS25685 0.74 -1.7 812,180 + AZOBR_RS25690 0.24 +0.8 812,181 - AZOBR_RS25690 0.24 +2.8 812,181 - AZOBR_RS25690 0.24 -3.2 812,181 - AZOBR_RS25690 0.24 +0.2 812,441 + AZOBR_RS25690 0.61 +0.7 812,442 - AZOBR_RS25690 0.62 -2.7 812,442 - AZOBR_RS25690 0.62 -0.1 812,512 + AZOBR_RS25690 0.72 -0.6 812,512 + AZOBR_RS25690 0.72 -0.2 812,737 - +2.3 812,737 - +0.3
Or see this region's nucleotide sequence