Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24070 and AZOBR_RS24075 are separated by 72 nucleotides AZOBR_RS24075 and AZOBR_RS24080 are separated by 116 nucleotides AZOBR_RS24080 and AZOBR_RS24085 are separated by 121 nucleotides
AZOBR_RS24070: AZOBR_RS24070 - acetyl-CoA hydrolase, at 438,986 to 440,479
_RS24070
AZOBR_RS24075: AZOBR_RS24075 - hypothetical protein, at 440,552 to 440,905
_RS24075
AZOBR_RS24080: AZOBR_RS24080 - methyl-accepting chemotaxis protein, at 441,022 to 442,725
_RS24080
AZOBR_RS24085: AZOBR_RS24085 - AMP-dependent synthetase, at 442,847 to 444,376
_RS24085
Position (kb) 441
442
443 Strain fitness (log2 ratio) -2
-1
0
1
2 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.372 kb on + strand at 440.706 kb on + strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.793 kb on + strand, within AZOBR_RS24075 at 440.941 kb on + strand at 440.941 kb on + strand at 442.136 kb on + strand, within AZOBR_RS24080 at 442.137 kb on - strand, within AZOBR_RS24080 at 442.397 kb on + strand, within AZOBR_RS24080 at 442.690 kb on + strand at 442.690 kb on + strand at 442.796 kb on - strand at 442.877 kb on + strand at 442.878 kb on - strand at 442.951 kb on - strand at 443.469 kb on + strand, within AZOBR_RS24085 at 443.640 kb on + strand, within AZOBR_RS24085
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 440,073 - AZOBR_RS24070 0.73 +0.8 440,073 - AZOBR_RS24070 0.73 +1.3 440,073 - AZOBR_RS24070 0.73 -1.9 440,073 - AZOBR_RS24070 0.73 +0.7 440,372 + +0.4 440,706 + AZOBR_RS24075 0.44 +0.4 440,707 - AZOBR_RS24075 0.44 -0.3 440,707 - AZOBR_RS24075 0.44 +1.8 440,793 + AZOBR_RS24075 0.68 +1.1 440,941 + -1.2 440,941 + -1.0 442,136 + AZOBR_RS24080 0.65 -1.2 442,137 - AZOBR_RS24080 0.65 -1.9 442,397 + AZOBR_RS24080 0.81 +0.3 442,690 + +0.2 442,690 + -0.2 442,796 - -0.0 442,877 + -0.1 442,878 - -0.2 442,951 - -0.5 443,469 + AZOBR_RS24085 0.41 -1.0 443,640 + AZOBR_RS24085 0.52 +1.4
Or see this region's nucleotide sequence