Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23680 and AZOBR_RS23685 are separated by 787 nucleotides
AZOBR_RS23680: AZOBR_RS23680 - hypothetical protein, at 346,621 to 347,577
_RS23680
AZOBR_RS23685: AZOBR_RS23685 - AsnC family transcriptional regulator, at 348,365 to 348,826
_RS23685
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 345.692 kb on + strand at 345.693 kb on - strand at 345.693 kb on - strand at 345.708 kb on - strand at 345.785 kb on + strand at 345.785 kb on + strand at 345.852 kb on - strand at 345.852 kb on - strand at 345.852 kb on - strand at 345.867 kb on - strand at 345.867 kb on - strand at 345.971 kb on + strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 346.070 kb on + strand at 346.071 kb on - strand at 346.121 kb on + strand at 346.122 kb on - strand at 346.430 kb on + strand at 346.617 kb on - strand at 346.617 kb on - strand at 346.968 kb on - strand, within AZOBR_RS23680 at 347.022 kb on - strand, within AZOBR_RS23680 at 347.022 kb on - strand, within AZOBR_RS23680 at 347.270 kb on + strand, within AZOBR_RS23680 at 347.270 kb on + strand, within AZOBR_RS23680 at 347.708 kb on + strand at 347.708 kb on + strand at 347.708 kb on + strand at 347.708 kb on + strand at 347.709 kb on - strand at 347.874 kb on - strand at 347.880 kb on + strand at 348.091 kb on + strand at 348.160 kb on - strand at 348.181 kb on - strand at 348.352 kb on + strand at 348.352 kb on + strand at 348.353 kb on + strand at 348.353 kb on - strand at 348.354 kb on + strand at 348.355 kb on - strand at 348.355 kb on - strand at 348.412 kb on - strand, within AZOBR_RS23685 at 348.472 kb on - strand, within AZOBR_RS23685 at 348.508 kb on - strand, within AZOBR_RS23685 at 348.508 kb on - strand, within AZOBR_RS23685 at 348.508 kb on - strand, within AZOBR_RS23685
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 345,692 + +1.0 345,693 - -1.8 345,693 - +2.3 345,708 - -0.8 345,785 + +0.5 345,785 + -0.4 345,852 - -0.7 345,852 - +1.1 345,852 - -0.0 345,867 - +0.0 345,867 - +2.3 345,971 + -0.7 345,972 - +0.2 345,972 - +1.0 345,972 - -1.2 345,972 - +0.7 345,972 - -2.2 346,070 + -1.0 346,071 - -0.4 346,121 + -0.5 346,122 - +0.0 346,430 + +2.3 346,617 - -3.9 346,617 - -0.2 346,968 - AZOBR_RS23680 0.36 -1.8 347,022 - AZOBR_RS23680 0.42 +0.3 347,022 - AZOBR_RS23680 0.42 -0.1 347,270 + AZOBR_RS23680 0.68 +1.7 347,270 + AZOBR_RS23680 0.68 -0.2 347,708 + -0.6 347,708 + +1.3 347,708 + +1.0 347,708 + -0.1 347,709 - +0.0 347,874 - +0.7 347,880 + +0.3 348,091 + +1.9 348,160 - +0.7 348,181 - -0.0 348,352 + -0.7 348,352 + -1.0 348,353 + +0.7 348,353 - -1.3 348,354 + -1.6 348,355 - -0.1 348,355 - +0.1 348,412 - AZOBR_RS23685 0.10 +0.8 348,472 - AZOBR_RS23685 0.23 +0.5 348,508 - AZOBR_RS23685 0.31 +0.9 348,508 - AZOBR_RS23685 0.31 +1.9 348,508 - AZOBR_RS23685 0.31 +1.7
Or see this region's nucleotide sequence