Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22480

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22475 and AZOBR_RS22480 are separated by 188 nucleotidesAZOBR_RS22480 and AZOBR_RS22485 are separated by 79 nucleotides AZOBR_RS22475: AZOBR_RS22475 - hypothetical protein, at 53,661 to 54,167 _RS22475 AZOBR_RS22480: AZOBR_RS22480 - tricarboxylate transporter, at 54,356 to 55,882 _RS22480 AZOBR_RS22485: AZOBR_RS22485 - hypothetical protein, at 55,962 to 56,666 _RS22485 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 53.407 kb on + strandat 53.408 kb on - strandat 53.408 kb on - strandat 53.408 kb on - strandat 53.408 kb on - strandat 53.576 kb on - strandat 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.826 kb on + strand, within AZOBR_RS22475at 53.827 kb on - strand, within AZOBR_RS22475at 53.827 kb on - strand, within AZOBR_RS22475at 53.827 kb on - strand, within AZOBR_RS22475at 53.827 kb on - strand, within AZOBR_RS22475at 53.986 kb on + strand, within AZOBR_RS22475at 53.986 kb on + strand, within AZOBR_RS22475at 53.994 kb on + strand, within AZOBR_RS22475at 53.994 kb on + strand, within AZOBR_RS22475at 53.995 kb on - strand, within AZOBR_RS22475at 53.995 kb on - strand, within AZOBR_RS22475at 53.995 kb on - strand, within AZOBR_RS22475at 54.125 kb on - strandat 54.197 kb on + strandat 54.378 kb on + strandat 54.379 kb on - strandat 54.419 kb on + strandat 54.419 kb on + strandat 54.419 kb on + strandat 54.419 kb on + strandat 54.419 kb on + strandat 54.420 kb on - strandat 54.420 kb on - strandat 54.420 kb on - strandat 54.420 kb on - strandat 54.557 kb on + strand, within AZOBR_RS22480at 54.557 kb on + strand, within AZOBR_RS22480at 54.557 kb on + strand, within AZOBR_RS22480at 54.557 kb on + strand, within AZOBR_RS22480at 54.558 kb on - strand, within AZOBR_RS22480at 54.558 kb on - strand, within AZOBR_RS22480at 54.558 kb on - strand, within AZOBR_RS22480at 54.558 kb on - strand, within AZOBR_RS22480at 54.607 kb on - strand, within AZOBR_RS22480at 54.607 kb on - strand, within AZOBR_RS22480at 54.607 kb on - strand, within AZOBR_RS22480at 55.193 kb on + strand, within AZOBR_RS22480at 55.193 kb on + strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.445 kb on + strandat 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.569 kb on - strand, within AZOBR_RS22480at 55.745 kb on - strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.881 kb on - strandat 55.881 kb on - strandat 55.881 kb on - strandat 56.151 kb on + strand, within AZOBR_RS22485at 56.152 kb on - strand, within AZOBR_RS22485at 56.169 kb on + strand, within AZOBR_RS22485at 56.463 kb on + strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.488 kb on - strand, within AZOBR_RS22485at 56.488 kb on - strand, within AZOBR_RS22485

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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53,407 + -0.9
53,408 - -0.0
53,408 - -0.8
53,408 - -1.8
53,408 - +1.5
53,576 - +2.3
53,826 + AZOBR_RS22475 0.33 -0.4
53,826 + AZOBR_RS22475 0.33 +1.1
53,826 + AZOBR_RS22475 0.33 -0.7
53,826 + AZOBR_RS22475 0.33 +1.7
53,826 + AZOBR_RS22475 0.33 +0.3
53,826 + AZOBR_RS22475 0.33 +0.5
53,826 + AZOBR_RS22475 0.33 +2.4
53,826 + AZOBR_RS22475 0.33 +1.4
53,826 + AZOBR_RS22475 0.33 +0.5
53,826 + AZOBR_RS22475 0.33 -0.2
53,827 - AZOBR_RS22475 0.33 +3.2
53,827 - AZOBR_RS22475 0.33 -1.6
53,827 - AZOBR_RS22475 0.33 +0.7
53,827 - AZOBR_RS22475 0.33 +2.3
53,986 + AZOBR_RS22475 0.64 -0.2
53,986 + AZOBR_RS22475 0.64 +0.5
53,994 + AZOBR_RS22475 0.66 +0.7
53,994 + AZOBR_RS22475 0.66 +1.3
53,995 - AZOBR_RS22475 0.66 -0.0
53,995 - AZOBR_RS22475 0.66 -0.1
53,995 - AZOBR_RS22475 0.66 -0.2
54,125 - +2.3
54,197 + -2.6
54,378 + +1.2
54,379 - +0.0
54,419 + -0.3
54,419 + -0.4
54,419 + -0.1
54,419 + +1.6
54,419 + +3.9
54,420 - +1.3
54,420 - -0.3
54,420 - -0.5
54,420 - +0.5
54,557 + AZOBR_RS22480 0.13 +0.7
54,557 + AZOBR_RS22480 0.13 -3.1
54,557 + AZOBR_RS22480 0.13 +0.5
54,557 + AZOBR_RS22480 0.13 -1.9
54,558 - AZOBR_RS22480 0.13 -0.4
54,558 - AZOBR_RS22480 0.13 -0.2
54,558 - AZOBR_RS22480 0.13 +0.3
54,558 - AZOBR_RS22480 0.13 +0.8
54,607 - AZOBR_RS22480 0.16 +0.3
54,607 - AZOBR_RS22480 0.16 -0.3
54,607 - AZOBR_RS22480 0.16 -2.2
55,193 + AZOBR_RS22480 0.55 -1.0
55,193 + AZOBR_RS22480 0.55 -0.4
55,194 - AZOBR_RS22480 0.55 -2.0
55,194 - AZOBR_RS22480 0.55 +0.4
55,194 - AZOBR_RS22480 0.55 -0.5
55,194 - AZOBR_RS22480 0.55 -0.4
55,445 + +2.3
55,445 + AZOBR_RS22480 0.71 -0.5
55,445 + AZOBR_RS22480 0.71 +0.3
55,445 + AZOBR_RS22480 0.71 -0.1
55,445 + AZOBR_RS22480 0.71 +1.3
55,445 + AZOBR_RS22480 0.71 -2.0
55,445 + AZOBR_RS22480 0.71 -0.1
55,445 + AZOBR_RS22480 0.71 +0.3
55,445 + AZOBR_RS22480 0.71 +1.2
55,445 + AZOBR_RS22480 0.71 +0.3
55,445 + AZOBR_RS22480 0.71 +0.2
55,446 - AZOBR_RS22480 0.71 -1.0
55,446 - AZOBR_RS22480 0.71 +1.5
55,446 - AZOBR_RS22480 0.71 -0.2
55,446 - AZOBR_RS22480 0.71 +0.5
55,569 - AZOBR_RS22480 0.79 -0.4
55,745 - -0.7
55,880 + -0.4
55,880 + +0.6
55,880 + -0.3
55,880 + +0.6
55,881 - -1.1
55,881 - +0.7
55,881 - +0.3
56,151 + AZOBR_RS22485 0.27 +0.8
56,152 - AZOBR_RS22485 0.27 -0.2
56,169 + AZOBR_RS22485 0.29 -3.1
56,463 + AZOBR_RS22485 0.71 +0.9
56,464 - AZOBR_RS22485 0.71 +0.2
56,464 - AZOBR_RS22485 0.71 +0.9
56,464 - AZOBR_RS22485 0.71 +0.1
56,488 - AZOBR_RS22485 0.75 -0.3
56,488 - AZOBR_RS22485 0.75 +0.4

Or see this region's nucleotide sequence