Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16250 and AZOBR_RS16255 are separated by 72 nucleotides AZOBR_RS16255 and AZOBR_RS16260 are separated by 40 nucleotides AZOBR_RS16260 and AZOBR_RS16265 are separated by 77 nucleotides
AZOBR_RS16250: AZOBR_RS16250 - LysR family transcriptional regulator, at 397,495 to 398,409
_RS16250
AZOBR_RS16255: AZOBR_RS16255 - membrane protein, at 398,482 to 398,964
_RS16255
AZOBR_RS16260: AZOBR_RS16260 - azoreductase, at 399,005 to 399,604
_RS16260
AZOBR_RS16265: AZOBR_RS16265 - 3-oxoacyl-ACP reductase, at 399,682 to 400,461
_RS16265
Position (kb) 398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.485 kb on + strand at 397.486 kb on - strand at 397.486 kb on - strand at 397.486 kb on - strand at 397.537 kb on + strand at 397.537 kb on + strand at 397.537 kb on + strand at 397.538 kb on - strand at 397.643 kb on + strand, within AZOBR_RS16250 at 397.830 kb on - strand, within AZOBR_RS16250 at 397.830 kb on - strand, within AZOBR_RS16250 at 398.236 kb on + strand, within AZOBR_RS16250 at 398.734 kb on + strand, within AZOBR_RS16255 at 398.735 kb on - strand, within AZOBR_RS16255 at 398.735 kb on - strand, within AZOBR_RS16255 at 398.735 kb on - strand, within AZOBR_RS16255 at 399.266 kb on + strand, within AZOBR_RS16260 at 399.267 kb on - strand, within AZOBR_RS16260 at 399.408 kb on + strand, within AZOBR_RS16260 at 399.409 kb on - strand, within AZOBR_RS16260
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 397,485 + -0.1 397,486 - -0.2 397,486 - +2.3 397,486 - +0.5 397,537 + -3.2 397,537 + -0.7 397,537 + +0.1 397,538 - -0.1 397,643 + AZOBR_RS16250 0.16 -0.9 397,830 - AZOBR_RS16250 0.37 +0.3 397,830 - AZOBR_RS16250 0.37 -1.0 398,236 + AZOBR_RS16250 0.81 -0.1 398,734 + AZOBR_RS16255 0.52 +0.3 398,735 - AZOBR_RS16255 0.52 -1.0 398,735 - AZOBR_RS16255 0.52 -2.1 398,735 - AZOBR_RS16255 0.52 +0.1 399,266 + AZOBR_RS16260 0.43 -1.5 399,267 - AZOBR_RS16260 0.44 -0.1 399,408 + AZOBR_RS16260 0.67 +1.0 399,409 - AZOBR_RS16260 0.67 -0.2
Or see this region's nucleotide sequence