Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16205 and AZOBR_RS16210 are separated by 163 nucleotides AZOBR_RS16210 and AZOBR_RS16215 are separated by 112 nucleotides AZOBR_RS16215 and AZOBR_RS16220 are separated by 166 nucleotides
AZOBR_RS16205: AZOBR_RS16205 - hypothetical protein, at 385,020 to 385,910
_RS16205
AZOBR_RS16210: AZOBR_RS16210 - hypothetical protein, at 386,074 to 386,292
_RS16210
AZOBR_RS16215: AZOBR_RS16215 - aspartyl-tRNA synthetase, at 386,405 to 388,234
_RS16215
AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567
_RS16220
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -1
0
1
2 at 385.964 kb on + strand at 386.254 kb on + strand, within AZOBR_RS16210 at 386.254 kb on + strand, within AZOBR_RS16210 at 386.255 kb on - strand, within AZOBR_RS16210 at 386.255 kb on - strand, within AZOBR_RS16210 at 386.255 kb on - strand, within AZOBR_RS16210 at 388.389 kb on + strand at 388.389 kb on + strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.503 kb on + strand at 388.504 kb on - strand at 388.504 kb on - strand at 388.849 kb on - strand, within AZOBR_RS16220 at 388.849 kb on - strand, within AZOBR_RS16220 at 388.884 kb on + strand, within AZOBR_RS16220 at 388.971 kb on + strand, within AZOBR_RS16220
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 385,964 + +0.9 386,254 + AZOBR_RS16210 0.82 +0.1 386,254 + AZOBR_RS16210 0.82 +2.3 386,255 - AZOBR_RS16210 0.83 -0.0 386,255 - AZOBR_RS16210 0.83 +1.0 386,255 - AZOBR_RS16210 0.83 +1.3 388,389 + +0.1 388,389 + +0.8 388,465 - +0.7 388,465 - -1.7 388,465 - -0.7 388,503 + +2.3 388,504 - -0.9 388,504 - +1.3 388,849 - AZOBR_RS16220 0.38 -0.9 388,849 - AZOBR_RS16220 0.38 +0.7 388,884 + AZOBR_RS16220 0.41 -1.6 388,971 + AZOBR_RS16220 0.49 +2.3
Or see this region's nucleotide sequence