Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15910 and AZOBR_RS15915 are separated by 164 nucleotides AZOBR_RS15915 and AZOBR_RS15920 are separated by 30 nucleotides
AZOBR_RS15910: AZOBR_RS15910 - hypothetical protein, at 322,747 to 324,030
_RS15910
AZOBR_RS15915: AZOBR_RS15915 - gluconate TRAP transporter, periplasmic solute-binding component <small>(from data)</small>, at 324,195 to 325,208
_RS15915
AZOBR_RS15920: AZOBR_RS15920 - Large component of TRAP-type D-gluconate transporter <small>(from data)</small>, at 325,239 to 326,519
_RS15920
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.692 kb on + strand, within AZOBR_RS15910 at 323.788 kb on + strand, within AZOBR_RS15910 at 323.789 kb on - strand, within AZOBR_RS15910 at 323.922 kb on + strand at 324.197 kb on - strand at 324.497 kb on - strand, within AZOBR_RS15915 at 324.520 kb on + strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.535 kb on + strand, within AZOBR_RS15915 at 324.536 kb on - strand, within AZOBR_RS15915 at 324.667 kb on + strand, within AZOBR_RS15915 at 324.668 kb on - strand, within AZOBR_RS15915 at 325.312 kb on + strand at 325.313 kb on - strand at 325.454 kb on - strand, within AZOBR_RS15920 at 325.651 kb on + strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.780 kb on + strand, within AZOBR_RS15920 at 325.781 kb on - strand, within AZOBR_RS15920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 323,215 + AZOBR_RS15910 0.36 +0.8 323,215 + AZOBR_RS15910 0.36 -0.0 323,692 + AZOBR_RS15910 0.74 +0.8 323,788 + AZOBR_RS15910 0.81 -0.2 323,789 - AZOBR_RS15910 0.81 +0.1 323,922 + +0.9 324,197 - +2.3 324,497 - AZOBR_RS15915 0.30 -1.3 324,520 + AZOBR_RS15915 0.32 +0.6 324,521 - AZOBR_RS15915 0.32 -0.3 324,521 - AZOBR_RS15915 0.32 -0.1 324,535 + AZOBR_RS15915 0.34 -0.2 324,536 - AZOBR_RS15915 0.34 +0.7 324,667 + AZOBR_RS15915 0.47 +0.7 324,668 - AZOBR_RS15915 0.47 -0.9 325,312 + -0.2 325,313 - -2.1 325,454 - AZOBR_RS15920 0.17 +0.7 325,651 + AZOBR_RS15920 0.32 -0.1 325,652 - AZOBR_RS15920 0.32 -0.3 325,652 - AZOBR_RS15920 0.32 -0.6 325,780 + AZOBR_RS15920 0.42 +0.7 325,781 - AZOBR_RS15920 0.42 +0.1
Or see this region's nucleotide sequence