Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15080 and AZOBR_RS15085 are separated by 2 nucleotides AZOBR_RS15085 and AZOBR_RS15090 are separated by 1 nucleotides
AZOBR_RS15080: AZOBR_RS15080 - hypothetical protein, at 163,136 to 165,802
_RS15080
AZOBR_RS15085: AZOBR_RS15085 - exported protein of unknown function, at 165,805 to 166,647
_RS15085
AZOBR_RS15090: AZOBR_RS15090 - hypothetical protein, at 166,649 to 167,713
_RS15090
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 162.289 kb on + strand at 162.334 kb on + strand at 162.390 kb on - strand at 162.503 kb on + strand at 162.503 kb on + strand at 162.553 kb on - strand at 162.619 kb on + strand at 162.716 kb on + strand at 162.716 kb on + strand at 162.717 kb on - strand at 162.735 kb on + strand at 162.736 kb on - strand at 162.736 kb on - strand at 162.736 kb on - strand at 162.784 kb on - strand at 162.806 kb on - strand at 162.806 kb on - strand at 162.806 kb on - strand at 162.832 kb on - strand at 162.884 kb on + strand at 162.930 kb on + strand at 162.975 kb on - strand at 163.036 kb on - strand at 163.060 kb on + strand at 163.061 kb on - strand at 163.126 kb on - strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.222 kb on - strand at 163.518 kb on + strand, within AZOBR_RS15080 at 163.699 kb on - strand, within AZOBR_RS15080 at 163.893 kb on + strand, within AZOBR_RS15080 at 163.894 kb on - strand, within AZOBR_RS15080 at 163.980 kb on - strand, within AZOBR_RS15080 at 164.227 kb on - strand, within AZOBR_RS15080 at 164.619 kb on + strand, within AZOBR_RS15080 at 164.620 kb on - strand, within AZOBR_RS15080 at 165.237 kb on + strand, within AZOBR_RS15080 at 165.238 kb on - strand, within AZOBR_RS15080 at 165.806 kb on + strand at 165.806 kb on + strand at 165.836 kb on + strand at 165.837 kb on - strand at 165.959 kb on + strand, within AZOBR_RS15085 at 165.959 kb on + strand, within AZOBR_RS15085 at 165.960 kb on - strand, within AZOBR_RS15085 at 166.260 kb on + strand, within AZOBR_RS15085 at 166.261 kb on - strand, within AZOBR_RS15085 at 166.589 kb on + strand at 166.640 kb on - strand at 166.640 kb on - strand at 166.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 162,289 + -3.1 162,334 + +0.4 162,390 - -0.3 162,503 + +1.5 162,503 + +0.9 162,553 - -0.3 162,619 + +1.3 162,716 + +2.1 162,716 + +2.3 162,717 - +1.8 162,735 + +0.4 162,736 - +2.3 162,736 - -2.8 162,736 - -0.0 162,784 - +0.5 162,806 - +1.1 162,806 - +0.7 162,806 - +0.7 162,832 - +3.7 162,884 + +0.0 162,930 + +0.7 162,975 - +0.9 163,036 - -0.1 163,060 + +1.4 163,061 - -1.7 163,126 - +1.8 163,221 + +0.7 163,221 + +1.3 163,221 + +2.6 163,221 + +1.6 163,222 - +3.7 163,518 + AZOBR_RS15080 0.14 -1.1 163,699 - AZOBR_RS15080 0.21 +2.7 163,893 + AZOBR_RS15080 0.28 +0.6 163,894 - AZOBR_RS15080 0.28 +0.3 163,980 - AZOBR_RS15080 0.32 -0.3 164,227 - AZOBR_RS15080 0.41 -2.0 164,619 + AZOBR_RS15080 0.56 +0.7 164,620 - AZOBR_RS15080 0.56 +1.1 165,237 + AZOBR_RS15080 0.79 +2.7 165,238 - AZOBR_RS15080 0.79 -0.7 165,806 + -2.0 165,806 + -0.3 165,836 + +0.8 165,837 - +0.3 165,959 + AZOBR_RS15085 0.18 -1.2 165,959 + AZOBR_RS15085 0.18 +0.6 165,960 - AZOBR_RS15085 0.18 +0.9 166,260 + AZOBR_RS15085 0.54 +0.5 166,261 - AZOBR_RS15085 0.54 +0.8 166,589 + -0.6 166,640 - +0.6 166,640 - +0.7 166,711 - +0.8
Or see this region's nucleotide sequence