Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15025 and AZOBR_RS15030 are separated by 47 nucleotides AZOBR_RS15030 and AZOBR_RS15035 are separated by 27 nucleotides
AZOBR_RS15025: AZOBR_RS15025 - hypothetical protein, at 144,938 to 145,915
_RS15025
AZOBR_RS15030: AZOBR_RS15030 - membrane protein, at 145,963 to 146,925
_RS15030
AZOBR_RS15035: AZOBR_RS15035 - membrane protein, at 146,953 to 147,912
_RS15035
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 145.504 kb on + strand, within AZOBR_RS15025 at 146.098 kb on + strand, within AZOBR_RS15030 at 146.099 kb on - strand, within AZOBR_RS15030 at 146.340 kb on + strand, within AZOBR_RS15030 at 146.341 kb on - strand, within AZOBR_RS15030 at 146.341 kb on - strand, within AZOBR_RS15030 at 146.382 kb on - strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.512 kb on + strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.513 kb on - strand, within AZOBR_RS15030 at 146.653 kb on + strand, within AZOBR_RS15030 at 146.653 kb on + strand, within AZOBR_RS15030 at 146.653 kb on + strand, within AZOBR_RS15030 at 146.653 kb on + strand at 146.654 kb on - strand, within AZOBR_RS15030 at 146.987 kb on + strand at 146.987 kb on + strand at 146.987 kb on + strand at 146.987 kb on + strand at 146.987 kb on + strand at 146.988 kb on - strand at 146.988 kb on - strand at 146.988 kb on - strand at 146.988 kb on - strand at 146.988 kb on - strand at 146.988 kb on - strand at 146.988 kb on - strand at 147.099 kb on - strand, within AZOBR_RS15035 at 147.152 kb on + strand, within AZOBR_RS15035 at 147.152 kb on + strand, within AZOBR_RS15035 at 147.164 kb on + strand, within AZOBR_RS15035 at 147.165 kb on - strand, within AZOBR_RS15035 at 147.185 kb on + strand at 147.285 kb on - strand, within AZOBR_RS15035 at 147.290 kb on + strand, within AZOBR_RS15035 at 147.513 kb on - strand, within AZOBR_RS15035 at 147.732 kb on - strand, within AZOBR_RS15035 at 147.779 kb on + strand, within AZOBR_RS15035 at 147.779 kb on + strand, within AZOBR_RS15035 at 147.780 kb on - strand, within AZOBR_RS15035 at 147.780 kb on - strand, within AZOBR_RS15035 at 147.780 kb on - strand, within AZOBR_RS15035 at 147.782 kb on + strand, within AZOBR_RS15035 at 147.782 kb on + strand, within AZOBR_RS15035 at 147.783 kb on - strand, within AZOBR_RS15035
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 145,504 + AZOBR_RS15025 0.58 -2.5 146,098 + AZOBR_RS15030 0.14 -0.3 146,099 - AZOBR_RS15030 0.14 +0.3 146,340 + AZOBR_RS15030 0.39 +0.0 146,341 - AZOBR_RS15030 0.39 +3.1 146,341 - AZOBR_RS15030 0.39 +0.9 146,382 - AZOBR_RS15030 0.44 -1.3 146,512 + AZOBR_RS15030 0.57 -0.0 146,512 + AZOBR_RS15030 0.57 +0.4 146,512 + AZOBR_RS15030 0.57 -1.0 146,512 + AZOBR_RS15030 0.57 -0.4 146,512 + AZOBR_RS15030 0.57 -0.7 146,512 + AZOBR_RS15030 0.57 +0.7 146,512 + AZOBR_RS15030 0.57 -0.3 146,512 + AZOBR_RS15030 0.57 +1.0 146,512 + AZOBR_RS15030 0.57 -0.4 146,513 - AZOBR_RS15030 0.57 +0.5 146,513 - AZOBR_RS15030 0.57 -0.6 146,513 - AZOBR_RS15030 0.57 -0.5 146,513 - AZOBR_RS15030 0.57 +0.1 146,513 - AZOBR_RS15030 0.57 +0.3 146,513 - AZOBR_RS15030 0.57 +0.4 146,653 + AZOBR_RS15030 0.72 +0.9 146,653 + AZOBR_RS15030 0.72 +0.1 146,653 + AZOBR_RS15030 0.72 +0.2 146,653 + +2.3 146,654 - AZOBR_RS15030 0.72 +1.2 146,987 + -0.2 146,987 + +0.2 146,987 + +0.1 146,987 + -0.1 146,987 + +2.3 146,988 - -0.2 146,988 - +1.7 146,988 - +0.6 146,988 - -0.4 146,988 - +0.3 146,988 - +0.1 146,988 - +0.3 147,099 - AZOBR_RS15035 0.15 +0.8 147,152 + AZOBR_RS15035 0.21 -0.1 147,152 + AZOBR_RS15035 0.21 -0.2 147,164 + AZOBR_RS15035 0.22 +1.2 147,165 - AZOBR_RS15035 0.22 -0.3 147,185 + +2.3 147,285 - AZOBR_RS15035 0.35 +0.3 147,290 + AZOBR_RS15035 0.35 +1.9 147,513 - AZOBR_RS15035 0.58 +0.7 147,732 - AZOBR_RS15035 0.81 +0.3 147,779 + AZOBR_RS15035 0.86 +0.3 147,779 + AZOBR_RS15035 0.86 +0.2 147,780 - AZOBR_RS15035 0.86 +0.1 147,780 - AZOBR_RS15035 0.86 +1.0 147,780 - AZOBR_RS15035 0.86 +0.1 147,782 + AZOBR_RS15035 0.86 -0.1 147,782 + AZOBR_RS15035 0.86 +1.0 147,783 - AZOBR_RS15035 0.86 -0.6
Or see this region's nucleotide sequence