Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05275 and AZOBR_RS05280 are separated by 216 nucleotides AZOBR_RS05280 and AZOBR_RS05285 are separated by 19 nucleotides AZOBR_RS05285 and AZOBR_RS05290 are separated by 207 nucleotides
AZOBR_RS05275: AZOBR_RS05275 - hypothetical protein, at 1,120,346 to 1,121,203
_RS05275
AZOBR_RS05280: AZOBR_RS05280 - fuculose phosphate aldolase, at 1,121,420 to 1,122,118
_RS05280
AZOBR_RS05285: AZOBR_RS05285 - histidine kinase, at 1,122,138 to 1,124,213
_RS05285
AZOBR_RS05290: AZOBR_RS05290 - extradiol ring-cleavage dioxygenase, at 1,124,421 to 1,125,197
_RS05290
Position (kb) 1122
1123
1124
1125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1121.178 kb on - strand at 1121.319 kb on + strand at 1121.618 kb on + strand, within AZOBR_RS05280 at 1121.618 kb on + strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.765 kb on + strand, within AZOBR_RS05280 at 1121.765 kb on + strand, within AZOBR_RS05280 at 1121.766 kb on - strand, within AZOBR_RS05280 at 1121.766 kb on - strand, within AZOBR_RS05280 at 1121.810 kb on + strand, within AZOBR_RS05280 at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.247 kb on + strand at 1122.248 kb on - strand at 1122.250 kb on + strand at 1122.592 kb on + strand, within AZOBR_RS05285 at 1122.592 kb on + strand, within AZOBR_RS05285 at 1122.593 kb on - strand, within AZOBR_RS05285 at 1122.748 kb on + strand, within AZOBR_RS05285 at 1123.475 kb on - strand, within AZOBR_RS05285 at 1123.475 kb on - strand, within AZOBR_RS05285 at 1123.475 kb on - strand, within AZOBR_RS05285 at 1123.756 kb on + strand, within AZOBR_RS05285 at 1124.241 kb on + strand at 1124.241 kb on + strand at 1124.241 kb on + strand at 1124.332 kb on + strand at 1124.333 kb on - strand at 1124.333 kb on - strand at 1124.845 kb on + strand, within AZOBR_RS05290 at 1124.845 kb on + strand, within AZOBR_RS05290 at 1124.845 kb on + strand, within AZOBR_RS05290 at 1124.971 kb on + strand, within AZOBR_RS05290 at 1124.992 kb on + strand, within AZOBR_RS05290 at 1124.992 kb on + strand, within AZOBR_RS05290
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 1,121,178 - +2.3 1,121,319 + +0.2 1,121,618 + AZOBR_RS05280 0.28 -1.5 1,121,618 + AZOBR_RS05280 0.28 +3.6 1,121,619 - AZOBR_RS05280 0.28 -0.2 1,121,619 - AZOBR_RS05280 0.28 -3.5 1,121,619 - AZOBR_RS05280 0.28 +0.0 1,121,619 - AZOBR_RS05280 0.28 +0.3 1,121,765 + AZOBR_RS05280 0.49 -1.8 1,121,765 + AZOBR_RS05280 0.49 -0.5 1,121,766 - AZOBR_RS05280 0.49 +0.2 1,121,766 - AZOBR_RS05280 0.49 +1.0 1,121,810 + AZOBR_RS05280 0.56 +0.1 1,122,057 - +2.3 1,122,057 - +0.0 1,122,057 - -0.0 1,122,057 - +1.6 1,122,057 - +0.7 1,122,247 + -0.5 1,122,248 - -2.6 1,122,250 + -0.7 1,122,592 + AZOBR_RS05285 0.22 +0.2 1,122,592 + AZOBR_RS05285 0.22 -1.2 1,122,593 - AZOBR_RS05285 0.22 +0.1 1,122,748 + AZOBR_RS05285 0.29 +0.3 1,123,475 - AZOBR_RS05285 0.64 +0.7 1,123,475 - AZOBR_RS05285 0.64 -2.2 1,123,475 - AZOBR_RS05285 0.64 -0.0 1,123,756 + AZOBR_RS05285 0.78 +0.2 1,124,241 + +2.3 1,124,241 + +0.9 1,124,241 + +0.3 1,124,332 + -3.4 1,124,333 - +0.3 1,124,333 - -0.0 1,124,845 + AZOBR_RS05290 0.55 -1.2 1,124,845 + AZOBR_RS05290 0.55 +0.5 1,124,845 + AZOBR_RS05290 0.55 -0.1 1,124,971 + AZOBR_RS05290 0.71 -2.6 1,124,992 + AZOBR_RS05290 0.73 -0.0 1,124,992 + AZOBR_RS05290 0.73 +2.3
Or see this region's nucleotide sequence