Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04705 and AZOBR_RS04710 overlap by 4 nucleotides AZOBR_RS04710 and AZOBR_RS04715 are separated by 401 nucleotides AZOBR_RS04715 and AZOBR_RS04720 overlap by 4 nucleotides AZOBR_RS04720 and AZOBR_RS04725 overlap by 4 nucleotides
AZOBR_RS04705: AZOBR_RS04705 - 3-oxoacyl-ACP synthase, at 990,518 to 991,729
_RS04705
AZOBR_RS04710: AZOBR_RS04710 - hypothetical protein, at 991,726 to 991,977
_RS04710
AZOBR_RS04715: AZOBR_RS04715 - putative RND superfamily drug exporter, at 992,379 to 994,715
_RS04715
AZOBR_RS04720: AZOBR_RS04720 - conserved exported protein of unknown function, at 994,712 to 995,329
_RS04720
AZOBR_RS04725: AZOBR_RS04725 - thioesterase, at 995,326 to 995,733
_RS04725
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.533 kb on + strand, within AZOBR_RS04705 at 991.533 kb on + strand, within AZOBR_RS04705 at 991.534 kb on - strand, within AZOBR_RS04705 at 991.534 kb on - strand, within AZOBR_RS04705 at 991.775 kb on + strand, within AZOBR_RS04710 at 991.775 kb on + strand, within AZOBR_RS04710 at 991.797 kb on - strand, within AZOBR_RS04710 at 991.952 kb on + strand at 991.952 kb on + strand at 992.317 kb on + strand at 992.317 kb on + strand at 992.318 kb on - strand at 992.365 kb on - strand at 992.371 kb on + strand at 992.617 kb on + strand, within AZOBR_RS04715 at 992.831 kb on - strand, within AZOBR_RS04715 at 993.053 kb on + strand, within AZOBR_RS04715 at 993.054 kb on - strand, within AZOBR_RS04715 at 993.757 kb on + strand, within AZOBR_RS04715 at 993.769 kb on + strand, within AZOBR_RS04715 at 993.770 kb on - strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 994.387 kb on + strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.661 kb on - strand at 995.008 kb on - strand, within AZOBR_RS04720 at 995.463 kb on - strand, within AZOBR_RS04725 at 995.543 kb on + strand, within AZOBR_RS04725 at 995.544 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.657 kb on + strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.696 kb on + strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 991,533 + AZOBR_RS04705 0.84 +0.8 991,533 + AZOBR_RS04705 0.84 -0.3 991,534 - AZOBR_RS04705 0.84 +0.4 991,534 - AZOBR_RS04705 0.84 -0.8 991,775 + AZOBR_RS04710 0.19 -0.4 991,775 + AZOBR_RS04710 0.19 -0.9 991,797 - AZOBR_RS04710 0.28 -2.9 991,952 + +0.2 991,952 + -0.0 992,317 + -0.2 992,317 + -0.8 992,318 - -2.0 992,365 - -1.6 992,371 + -0.5 992,617 + AZOBR_RS04715 0.10 +0.4 992,831 - AZOBR_RS04715 0.19 -1.5 993,053 + AZOBR_RS04715 0.29 -0.7 993,054 - AZOBR_RS04715 0.29 -0.7 993,757 + AZOBR_RS04715 0.59 +1.1 993,769 + AZOBR_RS04715 0.59 -0.6 993,770 - AZOBR_RS04715 0.60 -0.2 993,936 + AZOBR_RS04715 0.67 +2.4 993,936 + AZOBR_RS04715 0.67 -1.4 993,936 + AZOBR_RS04715 0.67 -0.6 993,937 - AZOBR_RS04715 0.67 +1.3 993,937 - AZOBR_RS04715 0.67 +0.4 994,387 + AZOBR_RS04715 0.86 -1.2 994,388 - AZOBR_RS04715 0.86 +2.4 994,388 - AZOBR_RS04715 0.86 +0.2 994,388 - AZOBR_RS04715 0.86 -0.1 994,388 - AZOBR_RS04715 0.86 +2.4 994,388 - AZOBR_RS04715 0.86 -0.6 994,388 - AZOBR_RS04715 0.86 -2.1 994,388 - AZOBR_RS04715 0.86 +0.9 994,661 - +1.1 995,008 - AZOBR_RS04720 0.48 +0.0 995,463 - AZOBR_RS04725 0.34 -0.0 995,543 + AZOBR_RS04725 0.53 -0.5 995,544 - AZOBR_RS04725 0.53 +1.4 995,649 - AZOBR_RS04725 0.79 +0.1 995,649 - AZOBR_RS04725 0.79 +1.4 995,657 + AZOBR_RS04725 0.81 -1.4 995,658 - AZOBR_RS04725 0.81 -2.6 995,658 - AZOBR_RS04725 0.81 -1.1 995,658 - AZOBR_RS04725 0.81 -0.6 995,658 - AZOBR_RS04725 0.81 -0.5 995,658 - AZOBR_RS04725 0.81 -1.2 995,696 + -1.2 995,697 - -1.8 995,697 - +0.9 995,697 - -0.2 995,697 - +0.3
Or see this region's nucleotide sequence