Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04240 and AZOBR_RS04245 are separated by 4 nucleotides AZOBR_RS04245 and AZOBR_RS04250 are separated by 330 nucleotides
AZOBR_RS04240: AZOBR_RS04240 - cysteinyl-tRNA synthetase, at 893,492 to 894,865
_RS04240
AZOBR_RS04245: AZOBR_RS04245 - putative acyltransferase 3, at 894,870 to 896,066
_RS04245
AZOBR_RS04250: AZOBR_RS04250 - preQ0 transporter, at 896,397 to 896,861
_RS04250
Position (kb) 894
895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.871 kb on + strand at 894.871 kb on + strand at 895.114 kb on + strand, within AZOBR_RS04245 at 895.115 kb on - strand, within AZOBR_RS04245 at 895.123 kb on + strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.306 kb on + strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.658 kb on - strand, within AZOBR_RS04245 at 896.076 kb on + strand at 896.203 kb on + strand at 896.203 kb on + strand at 896.203 kb on + strand at 896.308 kb on - strand at 896.365 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.428 kb on + strand at 896.429 kb on - strand at 896.443 kb on - strand at 896.533 kb on - strand, within AZOBR_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 894,871 + -2.3 894,871 + +1.6 895,114 + AZOBR_RS04245 0.20 -0.1 895,115 - AZOBR_RS04245 0.20 -2.2 895,123 + AZOBR_RS04245 0.21 +0.1 895,124 - AZOBR_RS04245 0.21 -0.2 895,124 - AZOBR_RS04245 0.21 +0.6 895,124 - AZOBR_RS04245 0.21 +2.2 895,124 - AZOBR_RS04245 0.21 +0.1 895,306 + AZOBR_RS04245 0.36 +0.1 895,307 - AZOBR_RS04245 0.37 +0.4 895,307 - AZOBR_RS04245 0.37 +2.7 895,307 - AZOBR_RS04245 0.37 +0.7 895,658 - AZOBR_RS04245 0.66 -0.4 896,076 + -1.1 896,203 + -0.1 896,203 + -0.5 896,203 + -3.3 896,308 - -1.6 896,365 - +0.6 896,416 - -3.0 896,416 - -1.9 896,416 - -2.0 896,416 - -0.8 896,428 + +0.3 896,429 - -3.5 896,443 - -0.9 896,533 - AZOBR_RS04250 0.29 +1.3
Or see this region's nucleotide sequence