Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03210 and AZOBR_RS03215 are separated by 136 nucleotides AZOBR_RS03215 and AZOBR_RS03220 are separated by 113 nucleotides AZOBR_RS03220 and AZOBR_RS03225 are separated by 91 nucleotides
AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755
_RS03210
AZOBR_RS03215: AZOBR_RS03215 - hypothetical protein, at 682,892 to 683,377
_RS03215
AZOBR_RS03220: AZOBR_RS03220 - 3-dehydroquinate synthase, at 683,491 to 684,627
_RS03220
AZOBR_RS03225: AZOBR_RS03225 - shikimate kinase, at 684,719 to 685,207
_RS03225
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.778 kb on - strand at 683.091 kb on + strand, within AZOBR_RS03215 at 683.477 kb on + strand at 683.478 kb on - strand at 685.389 kb on - strand at 685.389 kb on - strand at 685.389 kb on - strand at 685.442 kb on + strand at 685.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 682,634 + AZOBR_RS03210 0.80 -2.0 682,634 + AZOBR_RS03210 0.80 -0.1 682,634 + AZOBR_RS03210 0.80 +0.5 682,634 + AZOBR_RS03210 0.80 -0.1 682,635 - AZOBR_RS03210 0.80 -1.7 682,635 - AZOBR_RS03210 0.80 +0.1 682,778 - -2.3 683,091 + AZOBR_RS03215 0.41 -0.4 683,477 + +0.2 683,478 - +0.9 685,389 - -1.3 685,389 - +1.4 685,389 - +0.6 685,442 + -0.4 685,492 - +0.1
Or see this region's nucleotide sequence