Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03005 and AZOBR_RS03010 are separated by 235 nucleotides AZOBR_RS03010 and AZOBR_RS03015 are separated by 76 nucleotides AZOBR_RS03015 and AZOBR_RS03020 are separated by 188 nucleotides AZOBR_RS03020 and AZOBR_RS03025 are separated by 216 nucleotides
AZOBR_RS03005: AZOBR_RS03005 - hypothetical protein, at 640,122 to 641,219
_RS03005
AZOBR_RS03010: AZOBR_RS03010 - hypothetical protein, at 641,455 to 641,688
_RS03010
AZOBR_RS03015: AZOBR_RS03015 - heat shock protein Hsp20, at 641,765 to 642,244
_RS03015
AZOBR_RS03020: AZOBR_RS03020 - hypothetical protein, at 642,433 to 642,813
_RS03020
AZOBR_RS03025: AZOBR_RS03025 - glycosyltransferase, at 643,030 to 643,971
_RS03025
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.774 kb on + strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.871 kb on - strand, within AZOBR_RS03005 at 640.871 kb on - strand, within AZOBR_RS03005 at 640.939 kb on + strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.952 kb on - strand, within AZOBR_RS03005 at 640.952 kb on - strand, within AZOBR_RS03005 at 641.341 kb on - strand at 641.352 kb on + strand at 641.597 kb on + strand, within AZOBR_RS03010 at 641.597 kb on + strand, within AZOBR_RS03010 at 641.597 kb on + strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.995 kb on - strand, within AZOBR_RS03015 at 641.995 kb on - strand, within AZOBR_RS03015 at 642.135 kb on + strand, within AZOBR_RS03015 at 642.136 kb on - strand, within AZOBR_RS03015 at 642.136 kb on - strand, within AZOBR_RS03015 at 642.144 kb on + strand, within AZOBR_RS03015 at 642.347 kb on - strand at 642.347 kb on - strand at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 643.079 kb on + strand at 643.079 kb on + strand at 643.079 kb on + strand at 643.079 kb on + strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.094 kb on + strand at 643.094 kb on + strand at 643.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 640,774 + AZOBR_RS03005 0.59 -0.5 640,775 - AZOBR_RS03005 0.59 -1.3 640,775 - AZOBR_RS03005 0.59 +1.5 640,775 - AZOBR_RS03005 0.59 +0.1 640,870 + AZOBR_RS03005 0.68 -0.6 640,870 + AZOBR_RS03005 0.68 -0.6 640,870 + AZOBR_RS03005 0.68 -0.5 640,870 + AZOBR_RS03005 0.68 -0.0 640,871 - AZOBR_RS03005 0.68 +0.5 640,871 - AZOBR_RS03005 0.68 +1.1 640,939 + AZOBR_RS03005 0.74 -1.8 640,940 - AZOBR_RS03005 0.74 +0.2 640,940 - AZOBR_RS03005 0.74 -0.3 640,940 - AZOBR_RS03005 0.74 +0.0 640,952 - AZOBR_RS03005 0.76 +0.3 640,952 - AZOBR_RS03005 0.76 +2.4 641,341 - -0.6 641,352 + -0.6 641,597 + AZOBR_RS03010 0.61 +1.1 641,597 + AZOBR_RS03010 0.61 +1.3 641,597 + AZOBR_RS03010 0.61 -0.3 641,598 - AZOBR_RS03010 0.61 +0.2 641,598 - AZOBR_RS03010 0.61 -2.1 641,598 - AZOBR_RS03010 0.61 +0.5 641,995 - AZOBR_RS03015 0.48 +0.9 641,995 - AZOBR_RS03015 0.48 -0.7 642,135 + AZOBR_RS03015 0.77 -2.0 642,136 - AZOBR_RS03015 0.77 -1.1 642,136 - AZOBR_RS03015 0.77 -1.6 642,144 + AZOBR_RS03015 0.79 -0.4 642,347 - +0.3 642,347 - +0.0 642,488 + AZOBR_RS03020 0.14 +1.0 642,488 + AZOBR_RS03020 0.14 -1.7 642,488 + AZOBR_RS03020 0.14 +1.6 642,488 + AZOBR_RS03020 0.14 +0.1 643,079 + -0.7 643,079 + +0.9 643,079 + -0.0 643,079 + +0.1 643,080 - -1.0 643,080 - +0.2 643,094 + -2.7 643,094 + -1.6 643,095 - +0.4
Or see this region's nucleotide sequence