Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01375 and AZOBR_RS01380 are separated by 461 nucleotides AZOBR_RS01380 and AZOBR_RS01385 are separated by 227 nucleotides AZOBR_RS01385 and AZOBR_RS01390 are separated by 298 nucleotides
AZOBR_RS01375: AZOBR_RS01375 - hypothetical protein, at 285,173 to 285,685
_RS01375
AZOBR_RS01380: AZOBR_RS01380 - hypothetical protein, at 286,147 to 286,452
_RS01380
AZOBR_RS01385: AZOBR_RS01385 - polynucleotide phosphorylase, at 286,680 to 288,800
_RS01385
AZOBR_RS01390: AZOBR_RS01390 - 30S ribosomal protein S15, at 289,099 to 289,368
_RS01390
Position (kb)
286
287
288
289 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 285.717 kb on - strand at 285.754 kb on + strand at 285.755 kb on - strand at 285.755 kb on - strand at 285.836 kb on + strand at 286.083 kb on - strand at 286.083 kb on - strand at 286.550 kb on + strand at 286.550 kb on + strand at 286.551 kb on - strand at 286.648 kb on + strand at 288.848 kb on - strand at 288.919 kb on - strand at 288.975 kb on - strand at 288.975 kb on - strand at 289.787 kb on + strand at 289.787 kb on + strand at 289.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 285,717 - -0.2 285,754 + +2.5 285,755 - -1.7 285,755 - +1.1 285,836 + +0.1 286,083 - +0.1 286,083 - -1.0 286,550 + +0.9 286,550 + +1.1 286,551 - -0.2 286,648 + -0.3 288,848 - +1.6 288,919 - -0.3 288,975 - -1.4 288,975 - +0.3 289,787 + -2.1 289,787 + +0.9 289,788 - +2.1
Or see this region's nucleotide sequence