Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01365

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01360 and AZOBR_RS01365 are separated by 0 nucleotidesAZOBR_RS01365 and AZOBR_RS01370 are separated by 125 nucleotides AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587 _RS01360 AZOBR_RS01365: AZOBR_RS01365 - membrane protein, at 283,588 to 284,142 _RS01365 AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161 _RS01370 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.644 kb on - strandat 282.664 kb on + strand, within AZOBR_RS01360at 282.709 kb on + strand, within AZOBR_RS01360at 282.718 kb on + strand, within AZOBR_RS01360at 282.743 kb on - strand, within AZOBR_RS01360at 282.946 kb on + strand, within AZOBR_RS01360at 282.947 kb on - strand, within AZOBR_RS01360at 283.342 kb on + strand, within AZOBR_RS01360at 283.343 kb on - strand, within AZOBR_RS01360at 283.462 kb on + strand, within AZOBR_RS01360at 283.463 kb on - strandat 283.463 kb on - strand, within AZOBR_RS01360at 283.763 kb on + strand, within AZOBR_RS01365at 283.763 kb on + strand, within AZOBR_RS01365at 283.812 kb on - strand, within AZOBR_RS01365at 283.832 kb on + strand, within AZOBR_RS01365at 283.832 kb on + strand, within AZOBR_RS01365at 283.832 kb on + strand, within AZOBR_RS01365at 283.833 kb on - strand, within AZOBR_RS01365at 284.033 kb on + strand, within AZOBR_RS01365at 284.033 kb on + strand, within AZOBR_RS01365at 284.033 kb on + strand, within AZOBR_RS01365at 284.033 kb on + strand, within AZOBR_RS01365at 284.034 kb on - strand, within AZOBR_RS01365at 284.034 kb on - strand, within AZOBR_RS01365at 284.034 kb on - strand, within AZOBR_RS01365at 284.076 kb on - strand, within AZOBR_RS01365at 284.482 kb on - strand, within AZOBR_RS01370at 284.601 kb on + strand, within AZOBR_RS01370at 284.601 kb on + strand, within AZOBR_RS01370at 284.683 kb on - strand, within AZOBR_RS01370at 284.683 kb on - strand, within AZOBR_RS01370at 284.683 kb on - strand, within AZOBR_RS01370at 284.706 kb on + strand, within AZOBR_RS01370at 284.706 kb on + strand, within AZOBR_RS01370at 284.706 kb on + strand, within AZOBR_RS01370at 284.707 kb on - strand, within AZOBR_RS01370at 284.707 kb on - strand, within AZOBR_RS01370at 284.707 kb on - strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.775 kb on + strand, within AZOBR_RS01370at 284.776 kb on - strand, within AZOBR_RS01370at 284.776 kb on - strand, within AZOBR_RS01370at 284.776 kb on - strand, within AZOBR_RS01370at 284.776 kb on - strand, within AZOBR_RS01370at 284.776 kb on - strand, within AZOBR_RS01370

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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282,644 - -0.4
282,664 + AZOBR_RS01360 0.11 -2.5
282,709 + AZOBR_RS01360 0.15 -2.5
282,718 + AZOBR_RS01360 0.16 -1.7
282,743 - AZOBR_RS01360 0.18 -1.7
282,946 + AZOBR_RS01360 0.38 -1.5
282,947 - AZOBR_RS01360 0.38 -1.4
283,342 + AZOBR_RS01360 0.76 -2.0
283,343 - AZOBR_RS01360 0.76 -2.0
283,462 + AZOBR_RS01360 0.88 -1.3
283,463 - +1.1
283,463 - AZOBR_RS01360 0.88 -3.2
283,763 + AZOBR_RS01365 0.32 +0.5
283,763 + AZOBR_RS01365 0.32 +0.3
283,812 - AZOBR_RS01365 0.40 -1.8
283,832 + AZOBR_RS01365 0.44 +0.7
283,832 + AZOBR_RS01365 0.44 +0.6
283,832 + AZOBR_RS01365 0.44 -1.1
283,833 - AZOBR_RS01365 0.44 -1.4
284,033 + AZOBR_RS01365 0.80 +1.3
284,033 + AZOBR_RS01365 0.80 +0.1
284,033 + AZOBR_RS01365 0.80 +0.2
284,033 + AZOBR_RS01365 0.80 +1.8
284,034 - AZOBR_RS01365 0.80 -1.3
284,034 - AZOBR_RS01365 0.80 +0.4
284,034 - AZOBR_RS01365 0.80 +0.0
284,076 - AZOBR_RS01365 0.88 +2.2
284,482 - AZOBR_RS01370 0.24 -2.5
284,601 + AZOBR_RS01370 0.37 -1.3
284,601 + AZOBR_RS01370 0.37 -0.3
284,683 - AZOBR_RS01370 0.46 +0.0
284,683 - AZOBR_RS01370 0.46 -1.3
284,683 - AZOBR_RS01370 0.46 +1.1
284,706 + AZOBR_RS01370 0.49 +0.3
284,706 + AZOBR_RS01370 0.49 +0.3
284,706 + AZOBR_RS01370 0.49 +0.1
284,707 - AZOBR_RS01370 0.49 -0.1
284,707 - AZOBR_RS01370 0.49 +0.5
284,707 - AZOBR_RS01370 0.49 +0.2
284,775 + AZOBR_RS01370 0.57 +0.2
284,775 + AZOBR_RS01370 0.57 -0.1
284,775 + AZOBR_RS01370 0.57 -0.8
284,775 + AZOBR_RS01370 0.57 -0.5
284,775 + AZOBR_RS01370 0.57 -0.5
284,775 + AZOBR_RS01370 0.57 +0.1
284,776 - AZOBR_RS01370 0.57 -0.2
284,776 - AZOBR_RS01370 0.57 +0.4
284,776 - AZOBR_RS01370 0.57 -1.0
284,776 - AZOBR_RS01370 0.57 -1.7
284,776 - AZOBR_RS01370 0.57 +0.7

Or see this region's nucleotide sequence