Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2208

Experiment: 2 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntera and DvMF_2208 are separated by 129 nucleotidesDvMF_2208 and DvMF_2209 are separated by 292 nucleotides DvMF_2207: era - GTP-binding protein Era (RefSeq), at 2,761,110 to 2,762,033 era DvMF_2208: DvMF_2208 - alanine racemase domain protein (RefSeq), at 2,762,163 to 2,762,981 _2208 DvMF_2209: DvMF_2209 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,763,274 to 2,764,032 _2209 Position (kb) 2762 2763Strain fitness (log2 ratio) -1 0 1at 2761.980 kb on + strandat 2762.222 kb on - strandat 2762.327 kb on + strand, within DvMF_2208at 2762.549 kb on + strand, within DvMF_2208at 2762.555 kb on - strand, within DvMF_2208at 2762.584 kb on + strand, within DvMF_2208at 2763.341 kb on - strandat 2763.581 kb on - strand, within DvMF_2209at 2763.849 kb on + strand, within DvMF_2209

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 37C
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2,761,980 + -0.7
2,762,222 - -0.7
2,762,327 + DvMF_2208 0.20 +0.4
2,762,549 + DvMF_2208 0.47 -0.2
2,762,555 - DvMF_2208 0.48 +0.1
2,762,584 + DvMF_2208 0.51 -0.3
2,763,341 - +0.7
2,763,581 - DvMF_2209 0.40 +0.7
2,763,849 + DvMF_2209 0.76 +1.4

Or see this region's nucleotide sequence