Experiment: 2 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1775 and DvMF_1776 are separated by 415 nucleotides DvMF_1776 and DvMF_1777 are separated by 97 nucleotides
DvMF_1775: DvMF_1775 - acetate/CoA ligase (RefSeq), at 2,171,029 to 2,173,032
_1775
DvMF_1776: DvMF_1776 - GCN5-related N-acetyltransferase (RefSeq), at 2,173,448 to 2,176,144
_1776
DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597
_1777
Position (kb)
2173
2174
2175
2176
2177 Strain fitness (log2 ratio)
-2
-1
0
1 at 2172.571 kb on + strand, within DvMF_1775 at 2172.579 kb on - strand, within DvMF_1775 at 2172.781 kb on - strand, within DvMF_1775 at 2172.795 kb on + strand, within DvMF_1775 at 2172.916 kb on - strand at 2173.125 kb on - strand at 2173.156 kb on + strand at 2173.327 kb on + strand at 2173.429 kb on + strand at 2173.558 kb on + strand at 2173.605 kb on + strand at 2173.830 kb on - strand, within DvMF_1776 at 2173.969 kb on + strand, within DvMF_1776 at 2173.969 kb on + strand, within DvMF_1776 at 2174.077 kb on - strand, within DvMF_1776 at 2174.257 kb on - strand, within DvMF_1776 at 2174.308 kb on + strand, within DvMF_1776 at 2174.350 kb on - strand, within DvMF_1776 at 2174.399 kb on - strand, within DvMF_1776 at 2174.499 kb on + strand, within DvMF_1776 at 2174.673 kb on + strand, within DvMF_1776 at 2174.933 kb on - strand, within DvMF_1776 at 2174.943 kb on - strand, within DvMF_1776 at 2174.994 kb on - strand, within DvMF_1776 at 2175.033 kb on + strand, within DvMF_1776 at 2175.119 kb on + strand, within DvMF_1776 at 2175.134 kb on + strand, within DvMF_1776 at 2175.192 kb on + strand, within DvMF_1776 at 2175.200 kb on - strand, within DvMF_1776 at 2175.302 kb on - strand, within DvMF_1776 at 2175.451 kb on + strand, within DvMF_1776 at 2175.618 kb on + strand, within DvMF_1776 at 2175.635 kb on + strand, within DvMF_1776
Per-strain Table
Position Strand Gene LocusTag Fraction 2 day starvation, 37C remove 2,172,571 + DvMF_1775 0.77 -1.8 2,172,579 - DvMF_1775 0.77 -1.5 2,172,781 - DvMF_1775 0.87 -1.4 2,172,795 + DvMF_1775 0.88 -1.3 2,172,916 - -1.6 2,173,125 - -0.1 2,173,156 + -0.3 2,173,327 + -0.3 2,173,429 + +0.6 2,173,558 + -1.9 2,173,605 + -2.7 2,173,830 - DvMF_1776 0.14 -1.9 2,173,969 + DvMF_1776 0.19 -1.4 2,173,969 + DvMF_1776 0.19 -1.1 2,174,077 - DvMF_1776 0.23 -1.4 2,174,257 - DvMF_1776 0.30 -1.4 2,174,308 + DvMF_1776 0.32 -0.2 2,174,350 - DvMF_1776 0.33 -2.3 2,174,399 - DvMF_1776 0.35 -1.0 2,174,499 + DvMF_1776 0.39 -1.2 2,174,673 + DvMF_1776 0.45 +0.1 2,174,933 - DvMF_1776 0.55 -1.2 2,174,943 - DvMF_1776 0.55 -0.9 2,174,994 - DvMF_1776 0.57 -1.6 2,175,033 + DvMF_1776 0.59 -2.4 2,175,119 + DvMF_1776 0.62 -1.4 2,175,134 + DvMF_1776 0.63 +0.0 2,175,192 + DvMF_1776 0.65 -1.4 2,175,200 - DvMF_1776 0.65 -0.9 2,175,302 - DvMF_1776 0.69 -0.5 2,175,451 + DvMF_1776 0.74 -1.2 2,175,618 + DvMF_1776 0.80 -1.1 2,175,635 + DvMF_1776 0.81 -1.4
Or see this region's nucleotide sequence